View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10705_low_13 (Length: 211)
Name: NF10705_low_13
Description: NF10705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10705_low_13 |
 | |
|
| [»] scaffold0685 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 108390 - 108216
Alignment:
| Q |
18 |
gaagggtacagttcacgtaaaatcttcacaatttctgagtagtgcgctacactctcaaccaaacaatgtcttccactagctgaagcattttcgtatgcca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
108390 |
gaagggtacagttcacgtaaaatcttcacaatttctgagtagtgcgctacactctcaaccaaacaatgtcttccactagctgaagcattctcgtacgcca |
108291 |
T |
|
| Q |
118 |
gaatatgggcatttgcaacatctttcacatacacccatcccaaagtagaatttggaaatgtttgtgtacctgtat |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
108290 |
gaatatgggcatttgcaacatctttcacatacacccatcccaaagtagaatttggaaatgtttgtgtacctgtat |
108216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 89284 - 89106
Alignment:
| Q |
18 |
gaagggtacagttcacgtaaaatcttcacaatttctgagtagtgcgctacactctcaaccaaacaatgtcttccactagctgaagcattttcgtatgcca |
117 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||| |||||||| ||||| |||||||| ||||||||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
89284 |
gaagggtacagttcacgtaaaatcctcacaacttcggagtagtgtgctactctctcaactaaacaatgtcttccactcgctgaagcattctcgtacgcca |
89185 |
T |
|
| Q |
118 |
gaatatgggcatttgcaacatctttcacatacacccatcccaaagtagaatttggaaatgtttgtgtacctgtatcaag |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||| ||| |||||||||||| |||| |||||||||||| |
|
|
| T |
89184 |
gaatatgggcatttgcaacatctttcacattgacccatccaaaactagcatttggaaatgtctgtgcacctgtatcaag |
89106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 99 - 196
Target Start/End: Complemental strand, 2708162 - 2708065
Alignment:
| Q |
99 |
gaagcattttcgtatgccagaatatgggcatttgcaacatctttcacatacacccatcccaaagtagaatttggaaatgtttgtgtacctgtatcaag |
196 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||| ||| ||| |||| |||||||||||| |||||||||||| |
|
|
| T |
2708162 |
gaagcattctcgtacgccagaatatgggcatttgcaacatctttcacattgacccatcaaaaactagcatttcgaaatgtttgtgcacctgtatcaag |
2708065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 21 - 147
Target Start/End: Complemental strand, 25935971 - 25935845
Alignment:
| Q |
21 |
gggtacagttcacgtaaaatcttcacaatttctgagtagtgcgctacactctcaaccaaacaatgtcttccactagctgaagcattttcgtatgccagaa |
120 |
Q |
| |
|
|||||||| |||||||||||| | ||| |||||| ||||| | || |||||| ||||||||| ||||||||||||||||||| | || |||||||||| |
|
|
| T |
25935971 |
gggtacagatcacgtaaaatcatagcaagttctgaatagtgtaccactctctcagccaaacaatatcttccactagctgaagcagtctcatatgccagaa |
25935872 |
T |
|
| Q |
121 |
tatgggcatttgcaacatctttcacat |
147 |
Q |
| |
|
||||||| || |||||||||||||||| |
|
|
| T |
25935871 |
tatgggcgttagcaacatctttcacat |
25935845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 26103054 - 26102984
Alignment:
| Q |
87 |
cttccactagctgaagcattttcgtatgccagaatatgggcatttgcaacatctttcacatacacccatcc |
157 |
Q |
| |
|
|||||||||||||||||| | || ||||| |||| ||||| || |||||||||||||||| |||||||| |
|
|
| T |
26103054 |
cttccactagctgaagcaatctcatatgcgtgaatgtgggcgttagcaacatctttcacattgacccatcc |
26102984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0685 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0685
Description:
Target: scaffold0685; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 196
Target Start/End: Complemental strand, 5644 - 5524
Alignment:
| Q |
76 |
ccaaacaatgtcttccactagctgaagcattttcgtatgccagaatatgggcatttgcaacatctttcacatacacccatcccaaagtagaatttggaaa |
175 |
Q |
| |
|
||||||||| ||||||||||| |||||||| || ||||| ||||||| || || |||||||| ||||||| | |||||| ||||||| ||| |||| |
|
|
| T |
5644 |
ccaaacaatatcttccactagttgaagcatcctcatatgcatgaatatgagcgttcgcaacatccttcacattgatccatccaaaagtagcattcagaaa |
5545 |
T |
|
| Q |
176 |
tgtttgtgtacctgtatcaag |
196 |
Q |
| |
|
|||||||| ||||| |||||| |
|
|
| T |
5544 |
tgtttgtgaacctgcatcaag |
5524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 29549972 - 29549900
Alignment:
| Q |
75 |
accaaacaatgtcttccactagctgaagcattttcgtatgccagaatatgggcatttgcaacatctttcacat |
147 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| || ||||| ||||||| |||||||||| ||| ||||||| |
|
|
| T |
29549972 |
accaaacaatatcttccactagctgaagcattctcatatgcttgaatatgtgcatttgcaatatccttcacat |
29549900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 196
Target Start/End: Complemental strand, 29556544 - 29556424
Alignment:
| Q |
76 |
ccaaacaatgtcttccactagctgaagcattttcgtatgccagaatatgggcatttgcaacatctttcacatacacccatcccaaagtagaatttggaaa |
175 |
Q |
| |
|
||||||||| ||||||||||| |||||||| || ||||| ||||||| || || |||||||| ||||||| | |||||| ||||||| ||| |||| |
|
|
| T |
29556544 |
ccaaacaatatcttccactagttgaagcatcctcatatgcatgaatatgagcgttcgcaacatccttcacattgatccatccaaaagtagcattcagaaa |
29556445 |
T |
|
| Q |
176 |
tgtttgtgtacctgtatcaag |
196 |
Q |
| |
|
|||||||| ||||| |||||| |
|
|
| T |
29556444 |
tgtttgtgaacctgcatcaag |
29556424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 29559893 - 29559824
Alignment:
| Q |
76 |
ccaaacaatgtcttccactagctgaagcattttcgtatgccagaatatgggcatttgcaacatctttcac |
145 |
Q |
| |
|
|||| |||| ||||||||| |||||||||| ||| ||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
29559893 |
ccaagcaatatcttccacttgctgaagcatcttcatatgcattaatatgggcgtttgcaacatccttcac |
29559824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University