View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10705_low_14 (Length: 208)

Name: NF10705_low_14
Description: NF10705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10705_low_14
NF10705_low_14
[»] chr1 (3 HSPs)
chr1 (62-126)||(30367605-30367669)
chr1 (18-60)||(30367461-30367503)
chr1 (18-60)||(14708223-14708265)
[»] chr6 (3 HSPs)
chr6 (18-60)||(31376296-31376338)
chr6 (62-115)||(31396176-31396229)
chr6 (62-100)||(31376155-31376193)
[»] chr7 (1 HSPs)
chr7 (129-193)||(8790671-8790735)
[»] chr2 (3 HSPs)
chr2 (129-174)||(43360777-43360822)
chr2 (129-166)||(37120466-37120503)
chr2 (131-175)||(17119326-17119370)
[»] chr8 (2 HSPs)
chr8 (129-193)||(41417797-41417861)
chr8 (130-193)||(26131885-26131948)
[»] chr4 (1 HSPs)
chr4 (130-193)||(52418893-52418956)
[»] scaffold0093 (1 HSPs)
scaffold0093 (129-166)||(16322-16359)
[»] chr3 (1 HSPs)
chr3 (133-194)||(11152193-11152254)


Alignment Details
Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 30367605 - 30367669
Alignment:
Q  62 aagtgttattctacaggaacttcattcctagttttttatggaagctgcagaaatggtttcttgtt 126  Q
    ||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  30367605 aagtgctattctacaggaacttcattcctagtgtcttatggaagctgcagaaatggtttcttgtt 30367669  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 30367461 - 30367503
Alignment:
Q  18 aggtggacttgcaagatatcttgaataggttcacttttgacag 60  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30367461 aggtggacttgcaagatatcttgaataggttcacttttgacag 30367503  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 14708265 - 14708223
Alignment:
Q  18 aggtggacttgcaagatatcttgaataggttcacttttgacag 60  Q
    ||||||| || |||||| |||||||||||||||||||||||||    
T  14708265 aggtggatttacaagatgtcttgaataggttcacttttgacag 14708223  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 31376338 - 31376296
Alignment:
Q  18 aggtggacttgcaagatatcttgaataggttcacttttgacag 60  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  31376338 aggtggacttgcaagatatcttgaataggttcacttttgacag 31376296  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 31396176 - 31396229
Alignment:
Q  62 aagtgttattctacaggaacttcattcctagttttttatggaagctgcagaaat 115  Q
    ||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  31396176 aagtgatattctataggaacttcattcctagttgtttatggaagctgcagaaat 31396229  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 100
Target Start/End: Complemental strand, 31376193 - 31376155
Alignment:
Q  62 aagtgttattctacaggaacttcattcctagttttttat 100  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  31376193 aagtgttattctacataaacttcattcctagttttttat 31376155  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 8790735 - 8790671
Alignment:
Q  129 tgataataaatattgggactagcggataatgtggcaactctagcaagagtgtgggccacctcatt 193  Q
    ||||||||||||||||||||||| ||||||||||||||   |||||| ||||| || ||||||||    
T  8790735 tgataataaatattgggactagctgataatgtggcaacctcagcaagggtgtgagctacctcatt 8790671  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 43360777 - 43360822
Alignment:
Q  129 tgataataaatattgggactagcggataatgtggcaactctagcaa 174  Q
    ||||||||||||||||||||| ||||||||| |||||| |||||||    
T  43360777 tgataataaatattgggactaccggataatgcggcaaccctagcaa 43360822  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 37120466 - 37120503
Alignment:
Q  129 tgataataaatattgggactagcggataatgtggcaac 166  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  37120466 tgataataaatattgggactagatgataatgtggcaac 37120503  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 17119370 - 17119326
Alignment:
Q  131 ataataaatattgggactagcggataatgtggcaactctagcaag 175  Q
    ||||||| ||||| |||||||||||||||||||||| | ||||||    
T  17119370 ataataagtattgcgactagcggataatgtggcaaccccagcaag 17119326  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 41417797 - 41417861
Alignment:
Q  129 tgataataaatattgggactagcggataatgtggcaactctagcaagagtgtgggccacctcatt 193  Q
    ||||||||||||| ||||||||| |||||||||  ||| | |||||||||||| || ||||||||    
T  41417797 tgataataaatatagggactagctgataatgtgataaccccagcaagagtgtgagctacctcatt 41417861  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 26131948 - 26131885
Alignment:
Q  130 gataataaatattgggactagcggataatgtggcaactctagcaagagtgtgggccacctcatt 193  Q
    ||||||||||| |||||||||||| ||||| |||||| | |||||| ||||| || ||||||||    
T  26131948 gataataaatagtgggactagcggttaatgcggcaaccccagcaagggtgtgagctacctcatt 26131885  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 52418956 - 52418893
Alignment:
Q  130 gataataaatattgggactagcggataatgtggcaactctagcaagagtgtgggccacctcatt 193  Q
    ||||||||||| |||||||||||| ||||| |||||| |||||||| ||||  || ||||||||    
T  52418956 gataataaataatgggactagcggttaatgcggcaaccctagcaagggtgtaagctacctcatt 52418893  T

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Target: scaffold0093 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 16322 - 16359
Alignment:
Q  129 tgataataaatattgggactagcggataatgtggcaac 166  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  16322 tgataataaatattgggactagttgataatgtggcaac 16359  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 11152193 - 11152254
Alignment:
Q  133 aataaatattgggactagcggataatgtggcaactctagcaagagtgtgggccacctcattg 194  Q
    |||||||| |||||||||| |||||||||||||| | ||| || ||||| || |||||||||    
T  11152193 aataaatagtgggactagctgataatgtggcaaccccagctagcgtgtgagctacctcattg 11152254  T

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