View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10705_low_2 (Length: 374)
Name: NF10705_low_2
Description: NF10705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10705_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 363
Target Start/End: Complemental strand, 9714365 - 9714019
Alignment:
| Q |
17 |
cacaacacaccataaccaagaaaggtgcttgcacatgccccacttccttagtatcaggaactgcatcatactccatcaaagtcatggaagatgaaacccc |
116 |
Q |
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| T |
9714365 |
cacaacacaccataaccaagaaaggtgcttgcacatgccccacttccttggcatcaggaactgcatcatactccatcaaagtcatggaagatgaaacccc |
9714266 |
T |
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| Q |
117 |
gggtcattactacagaggtatttgtagcaaacatggcacagttgatttattttgcgagcatgagacagttaattaacaagtctttatcacatagagagat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9714265 |
gggtcattactacagaggtatttgtagcaaacatgggacagttgattttttttgcgagcatgagacagttaattaacaagtctttatcacatagagagat |
9714166 |
T |
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| Q |
217 |
tacaaacgatattatgaaagtgtagagaccaataccaaacnnnnnnntacagggactaatgttaaaatatgatcaaagtgcggagaccaatgatatattt |
316 |
Q |
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| T |
9714165 |
tgcaaacgatattatgaaagtgtagggacgaataccaaacaaaaaaatataaagactaatgttaaaatatggtcaaagtgcggagaccaatgatatattt |
9714066 |
T |
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| Q |
317 |
aagtctatgatttatatgtaggtgagttcttaggcggaccgcttcat |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9714065 |
aagtctatgatttatatgtaggtgagttcttaggcggaccgcttcat |
9714019 |
T |
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