View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10705_low_8 (Length: 249)
Name: NF10705_low_8
Description: NF10705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10705_low_8 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 34296096 - 34296326
Alignment:
| Q |
15 |
gatacatgtgaatacataacatagtaacttaaggaataagcagtagctatcaaacaattacttctgttaaggatgccattttttgaataaagggaaaaac |
114 |
Q |
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| T |
34296096 |
gatacatgtgaatacataacatagtaacttaaggaataagcagtagctatcaaaca-ttgcttctgttaaggatgccattt---gaataaagggaaaaac |
34296191 |
T |
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| Q |
115 |
atactttttgggaaatagctatacctttaaaaaattcataattacaccaacctagggtacttgagaacaattttcacaaattcataagtcatacaatgaa |
214 |
Q |
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| T |
34296192 |
atactttttgggaaaaagctatacctttaaaaaattcataattacaccaacctagggtacttgagaacaattttcacaaattcataagtcatacaatgaa |
34296291 |
T |
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| Q |
215 |
ggtcaaaggaccaaaagtttatactgctaataatc |
249 |
Q |
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| T |
34296292 |
ggtcaaaggaccaaaagtttatactgctaataatc |
34296326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 34570394 - 34570465
Alignment:
| Q |
136 |
tacctttaaaaaattcataattacaccaacctagggtacttgagaacaattttcacaaattcataagtcata |
207 |
Q |
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|||||||||||| ||| |||||| |||||||| | || || ||||||||||||||||||||| ||| |||| |
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| T |
34570394 |
tacctttaaaaatttcttaattaaaccaaccttgagtgctaaagaacaattttcacaaattcacaagacata |
34570465 |
T |
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