View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10706_high_13 (Length: 251)

Name: NF10706_high_13
Description: NF10706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10706_high_13
NF10706_high_13
[»] chr3 (3 HSPs)
chr3 (13-98)||(22836263-22836348)
chr3 (173-240)||(22836120-22836187)
chr3 (13-89)||(22846592-22846668)


Alignment Details
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 22836348 - 22836263
Alignment:
Q  13 gaagaaagtaggtgtcaaaatcctttatctttcctttaaaaactaggttggtgggtatatcatcatatgcatatctaaattcatca 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22836348 gaagaaagtaggtgtcaaaatcctttatctttcctttaaaaactaggttggtgggtatatcatcatatgcatatctaaattcatca 22836263  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 22836187 - 22836120
Alignment:
Q  173 caataaaaagagggataaaaaggctgtcacaaaaaagttttttctctcatttttatatcactgttcat 240  Q
    ||||||||||||||| ||||||  |||||||||||||||||||||||||| |||||||||||||||||    
T  22836187 caataaaaagagggaaaaaaagattgtcacaaaaaagttttttctctcatatttatatcactgttcat 22836120  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 22846668 - 22846592
Alignment:
Q  13 gaagaaagtaggtgtcaaaatcctttatctttcctttaaaaactaggttggtgggtatatcatcatatgcatatcta 89  Q
    |||||| ||||||  ||||||  |||||||||||| | |||| ||||||||| ||||||  | ||||||||||||||    
T  22846668 gaagaaggtaggtaccaaaatattttatctttcctatcaaaattaggttggtaggtatactaccatatgcatatcta 22846592  T

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