View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10706_high_16 (Length: 250)

Name: NF10706_high_16
Description: NF10706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10706_high_16
NF10706_high_16
[»] chr4 (5 HSPs)
chr4 (10-250)||(43440518-43440758)
chr4 (101-248)||(43434742-43434889)
chr4 (114-250)||(43426250-43426386)
chr4 (30-94)||(43426145-43426209)
chr4 (36-94)||(43434665-43434723)
[»] scaffold0252 (1 HSPs)
scaffold0252 (112-248)||(20251-20387)
[»] chr3 (1 HSPs)
chr3 (214-250)||(41930402-41930438)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 43440518 - 43440758
Alignment:
Q  10 gcataggaacaacaaatccctccaagctttaacgatgaatcgcgtgaaagcaataactacttccctcagattcctcaaatcatcaaaatcactcgctact 109  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43440518 gcataggaacaacaaatccctccaagcttttacgatgaatcgcgtgaaagcaataactacttccctcagattcctcaaatcatcaaaatcactctctact 43440617  T
Q  110 ccgaaccaggttactcacttctcttctttcacattttcaatccctcttttgaatcattcacacgatctattccgttttcacaacaatcatcaaaaacact 209  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43440618 ccgaatcaggttactcacttctcttctttcactttttcaatccctcttttgaatcattcacacgatctattccgttttcacaacaatcatcaaaaacact 43440717  T
Q  210 gtttttcttcaaaacccaacatgattttagagcgtgtttac 250  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  43440718 gtttttcttcaaaacccaacatgattttagagcgtgtttac 43440758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 248
Target Start/End: Original strand, 43434742 - 43434889
Alignment:
Q  101 ctcgctactccgaaccaggttactcacttctcttctttcacattttcaatccctcttttgaatcattcacacgatctattccgttttcacaacaatcatc 200  Q
    ||||| |||| |||||||||| ||||||| ||||||| | | |||||| ||||||||||||| |  ||  | ||| | ||  ||||||||||||||||||    
T  43434742 ctcgcaactcggaaccaggtttctcacttttcttcttcctctttttcactccctcttttgaaccgatccaaagatttgttatgttttcacaacaatcatc 43434841  T
Q  201 aaaaacactgtttttcttcaaaacccaacatgattttagagcgtgttt 248  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  43434842 aaaaacactatttttcttcaaaacccaacatgattttggagcgtgttt 43434889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 250
Target Start/End: Original strand, 43426250 - 43426386
Alignment:
Q  114 accaggttactcacttctcttctttcacattttcaatccctcttttgaatcattcacacgatctattccgttttcacaacaatcatcaaaaacactgttt 213  Q
    |||||||| |||| || ||||||| | | |||||| | ||| | ||||||| ||||||| || |||| | ||||||||||| |||| ||||||||| |||    
T  43426250 accaggtttctcatttttcttcttcctccttttcacttcctatgttgaatcgttcacacaatttattaccttttcacaacagtcataaaaaacactattt 43426349  T
Q  214 ttcttcaaaacccaacatgattttagagcgtgtttac 250  Q
    ||||||||||||||||   ||||||||||||||||||    
T  43426350 ttcttcaaaacccaactcaattttagagcgtgtttac 43426386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 43426145 - 43426209
Alignment:
Q  30 tccaagctttaacgatgaatcgcgtgaaagcaataactacttccctcagattcctcaaatcatca 94  Q
    ||||| |||| |||||||||||| ||||||||||||| |||||||||| ||||||||||||||||    
T  43426145 tccaaacttttacgatgaatcgcatgaaagcaataaccacttccctcaaattcctcaaatcatca 43426209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 43434665 - 43434723
Alignment:
Q  36 ctttaacgatgaatcgcgtgaaagcaataactacttccctcagattcctcaaatcatca 94  Q
    |||| |||||||||||| |||||||||||||  | |||||||||| |||||||||||||    
T  43434665 cttttacgatgaatcgcatgaaagcaataacctcgtccctcagatacctcaaatcatca 43434723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 112 - 248
Target Start/End: Original strand, 20251 - 20387
Alignment:
Q  112 gaaccaggttactcacttctcttctttcacattttcaatccctcttttgaatcattcacacgatctattccgttttcacaacaatcatcaaaaacactgt 211  Q
    |||||||||| ||||||| ||||||| | | |||||| ||||||||| |||||  ||  | ||| | ||  ||||||||||||||||||||||||||| |    
T  20251 gaaccaggtttctcacttttcttcttcctctttttcactccctctttggaatcgatccaaagatttgttatgttttcacaacaatcatcaaaaacactat 20350  T
Q  212 ttttcttcaaaacccaacatgattttagagcgtgttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  20351 ttttcttcaaaacccaacatgattttagagcgtgttt 20387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 41930402 - 41930438
Alignment:
Q  214 ttcttcaaaacccaacatgattttagagcgtgtttac 250  Q
    |||||||||||||||||||||||||||||||||||||    
T  41930402 ttcttcaaaacccaacatgattttagagcgtgtttac 41930438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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