View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10706_high_18 (Length: 240)
Name: NF10706_high_18
Description: NF10706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10706_high_18 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 44 - 240
Target Start/End: Original strand, 29215833 - 29216028
Alignment:
| Q |
44 |
gaacccacacaacaaagccaaacaaattgtataaaattacggcgccgtctcatacctccagaagagtaaacaaagtgactgaaataattattgaaaactc |
143 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| | ||||| |||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
29215833 |
gaacccacacaacaaagccaaacaaactgtataaaattacggcgccgtcgcgtaccttcagaagtgtaaacaaactgactgaaataattattgaaaactc |
29215932 |
T |
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| Q |
144 |
atatacaaatagaacaaccaacgtttaaatcccgatcacagtattcgacaacaaatttcaatatttttacattatgatttctaaaataaatgcactc |
240 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29215933 |
gtatacaaatagaataaccaacgtttaaa-cccgatcacagtattcgacaacaaatttcaatatttttacattatgatttctaaaataaatgcactc |
29216028 |
T |
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