View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10706_high_2 (Length: 437)
Name: NF10706_high_2
Description: NF10706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10706_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 11 - 360
Target Start/End: Original strand, 4659291 - 4659637
Alignment:
| Q |
11 |
cataggcccaatgaatataaaaaacggacatgatggcagttgtcacacagatttttgttaaattagagagtctatggttgaaaatcgagaactataattt |
110 |
Q |
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| T |
4659291 |
cataggcccaatgaatataaaaaacggacatgatggcagttgtcacacaaatttttgttaaatcagagagtctatggttgaaaatcgagaactataattt |
4659390 |
T |
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| Q |
111 |
ataagagaaaacatatgtagataagatttttaattcttttctgcacggaagaagaaaatataaaagttgatgtatttatagaaaaaatatataattaggt |
210 |
Q |
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| T |
4659391 |
ataagagaaaacatatgtagataagatttttaattcttttctgtacggaagaagaaaatataaaagttgatgtatttatagaaaaaatatataattaggt |
4659490 |
T |
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| Q |
211 |
cctacgaatataggactaaatttaannnnnnnaaccagccatttttaatccacataatagatgaagacttgctagaagtcacctagtgtataataaataa |
310 |
Q |
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| T |
4659491 |
cctacgaatataggactaaatttaatttttttaaccagccatttttaatccacataatagatgaagacttgctagaagtcacctagtgt---ataaataa |
4659587 |
T |
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| Q |
311 |
catgcaatagtgggataccacggggagaaaaagacttgacaaagtctatg |
360 |
Q |
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| T |
4659588 |
catgcaatagtgggataccacggggagaaaaagacttgacaaagtctatg |
4659637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 349
Target Start/End: Original strand, 4632832 - 4632875
Alignment:
| Q |
306 |
aataacatgcaatagtgggataccacggggagaaaaagacttga |
349 |
Q |
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| T |
4632832 |
aataacatgcaatagtgggataccacgaggagacgaagacttga |
4632875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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