View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10706_high_24 (Length: 204)
Name: NF10706_high_24
Description: NF10706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10706_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 5921827 - 5921662
Alignment:
| Q |
23 |
accacgtgtgactatttacctccctagcaattgtctaggctgcataccttttatctcttttccaaaaacctttatattgggccaccattgtacagcttac |
122 |
Q |
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| T |
5921827 |
accacgtgtgactatttacctccctagcaattgtctatgctgcataccttttatctcttctccaaaaacctttatattgggccaccattgtacagcttac |
5921728 |
T |
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| Q |
123 |
gcgttgaaattaaatcaccacctcagtgcactcacagtttctgcatatatatcatccttttctctg |
188 |
Q |
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| T |
5921727 |
gcgttgaaattaaatcaccacctcagtgcactcacagtttctgcatatatatcatccttttctctg |
5921662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 68 - 188
Target Start/End: Complemental strand, 5985195 - 5985080
Alignment:
| Q |
68 |
accttttatctcttttccaaaaacctttatattgggccaccattgtacagcttacgcgttgaaattaaatcaccacctcagtgcactcacagtttctgca |
167 |
Q |
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| T |
5985195 |
acctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttgaatt-----caccacctcagtgcactcacagtttctgca |
5985101 |
T |
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| Q |
168 |
tatatatcatccttttctctg |
188 |
Q |
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| T |
5985100 |
tatatatcatccttttctctg |
5985080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 61 - 174
Target Start/End: Complemental strand, 5961019 - 5960911
Alignment:
| Q |
61 |
gctgcataccttttatctcttttccaaaaacctttatattgggccaccattgtacagcttacgcgttgaaattaaatcaccacctcagtgcactcacagt |
160 |
Q |
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| T |
5961019 |
gctgcataccttttatcaagtttccaaaaacctttatattgggccaccattgtacagtttccgcattg-----aagtcaccacctcagtgcactcacagt |
5960925 |
T |
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| Q |
161 |
ttctgcatatatat |
174 |
Q |
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|| ||||||||||| |
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| T |
5960924 |
ttgtgcatatatat |
5960911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 5949667 - 5949612
Alignment:
| Q |
61 |
gctgcataccttttatctcttttccaaaaacctttatattgggccaccattgtaca |
116 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5949667 |
gctgcataccttttatcaattttccaaaaacctttatattgggccaccattgtaca |
5949612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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