View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10706_high_6 (Length: 405)
Name: NF10706_high_6
Description: NF10706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10706_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 16 - 400
Target Start/End: Original strand, 41916475 - 41916859
Alignment:
| Q |
16 |
gtatctattagtgtttgtcttcaaccattgttcacatctttgtctttctcattcttctcttttatttttgtcaaaaactactatttcaaatggatcgttt |
115 |
Q |
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| T |
41916475 |
gtatctattagtgtttgtcttcaaccattgttcacatctttgtctttctcattcttctcttttgtttttgtcaaaaactactatttcaaatggatcgttt |
41916574 |
T |
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| Q |
116 |
ttcttctactactatcccttttgcattacatggagcaaaagatgacctaaccatgcagatttctttgatttggagccaaatcaaagctccattaatcgtt |
215 |
Q |
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| T |
41916575 |
ttcttctactactatcccttttgcattacaaggagcaaaagatgacctaaccatgcagatttctttgatttggagccaaatcaaagctccattaatcgtt |
41916674 |
T |
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| Q |
216 |
ccattactaagaatatcagtgtttttgtgtttgataatgtcggtgatgatgttcattgagagggtttatatgggtgttgtcattactcttgtgaagctat |
315 |
Q |
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| T |
41916675 |
ccattactaagaatatcagtgtttttgtgtttgataatgtcggtgatgatgttcattgagagggtttatatgggtgttgtcattactcttgtgaagctat |
41916774 |
T |
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| Q |
316 |
ttggaagaaaacctgaaaaacgttacaaatgggaaccgattaaggatgatattgagttagggaactcttgttatcctatgcttct |
400 |
Q |
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| T |
41916775 |
ttggaagaaaacctgaaaaacgttacaaatgggaaccgattaaggatgatattgagttagggaactcttgttatcctatggttct |
41916859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 252 - 400
Target Start/End: Complemental strand, 26833621 - 26833473
Alignment:
| Q |
252 |
atgtcggtgatgatgttcattgagagggtttatatgggtgttgtcattactcttgtgaagctatttggaagaaaacctgaaaaacgttacaaatgggaac |
351 |
Q |
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|||||| |||||||||| ||||||| ||||| ||||| |||| ||| || ||||||| | ||||| |||||||| || |||||||| |||||||| |
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| T |
26833621 |
atgtcgttgatgatgttggttgagagagtttacatgggaattgtgatttcttatgtgaagttgtttggtagaaaaccagagaaacgttataaatgggaga |
26833522 |
T |
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| Q |
352 |
cgattaaggatgatattgagttagggaactcttgttatcctatgcttct |
400 |
Q |
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| T |
26833521 |
ctattaaggatgatgttgagttgggaaactctaattaccctatggttct |
26833473 |
T |
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