View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10706_high_7 (Length: 391)
Name: NF10706_high_7
Description: NF10706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10706_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 380
Target Start/End: Original strand, 36192741 - 36193109
Alignment:
| Q |
18 |
aagaatctgacttgagacttttaacttttagtggagtgtcttcttccaaccatattttgtctcatcaacaagactcgaattcgagatttgttgatgaaaa |
117 |
Q |
| |
|
|||||||||||||||| | ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36192741 |
aagaatctgacttgagtcctttaacttttaatggagtgtcttcttccaaccacattttgtctcatcaacaagactcgaattcgagatttgttgatgaaaa |
36192840 |
T |
|
| Q |
118 |
aagcatggatgataggtgagactccaggaaacgttgtgaatattatggaagcaacctaatatatcaattgcaccacccttgaacaataaataattaaata |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36192841 |
aagcatggatgataggtgagactccaggaaacgttgtcaatattatggaagcaaccta--atatcaattacaccacccttgaacaataaataattaaata |
36192938 |
T |
|
| Q |
218 |
tacaaccccacaataatgtaatgtagt--------------gcacatttgaatttaatcaaatcttcgtatatgtatcacttgaaaatgtacttgactaa |
303 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36192939 |
tacaaccccacaataatgtaatgtagtccttcttctatatagcacatttgaatttaatcaaatcttc------gtatcacttgaaaatgtacttgactaa |
36193032 |
T |
|
| Q |
304 |
accagggagatgagtgttcataaagtaatcttcccaatcaatctcttttgggtcgaagtaaaataaatctatctctg |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36193033 |
accagggagatgagtgttcataaagtaatcttcccaatccatctcttttgggtcgaagtaaaataaatctatctctg |
36193109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University