View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10706_low_1 (Length: 471)
Name: NF10706_low_1
Description: NF10706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10706_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 72 - 461
Target Start/End: Complemental strand, 2564622 - 2564241
Alignment:
| Q |
72 |
aaattactgcattattctcctgtttgttccnnnnnnnnnnatagtaatttgtgtgttacacgattgaatgtttgattgaaaaattgtatgattgatnnnn |
171 |
Q |
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|||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
2564622 |
aaattactgcattattctcctgtttgttccttttttt---atcataatttgtgtgttgcacgattgaatgtttgattgaaaaattgtatgactgataaaa |
2564526 |
T |
|
| Q |
172 |
nnnnttgaatttgttaattggaaaagaaaaaacatgttgattgaaggataaattcctatgtttgtaaccatttaatttttctttcttggtaatactacct |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
2564525 |
aaaattgaatttgttaattggaaaagaaaaaacatgttgattgaaggataaattcctatgtatgtaaccattcaatttttctttcttggtaatactacct |
2564426 |
T |
|
| Q |
272 |
ttaatttgttcaatcaacctaagaacaaattcaannnnnnnncgtccaatagaagatataagtttgtgtgtttgtttgatactaagttcctatcatgtca |
371 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
2564425 |
ttaatttgttcaatcaacctaagaacaaattcaattttttttcgtccaatggaagatataagtgtgtgtgtttgtttgatac-----tcctatcatgtca |
2564331 |
T |
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| Q |
372 |
gtatcatatcgtatccttattcaacttcttattctatttcatatctatcttatcatgcacacccaacaaccttaaatttttatctctctg |
461 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2564330 |
gtatcacatcgtatccttattcaacttcttattctatttcatatctatcttatcatgcacacccaacaaccttaaatttttatcactctg |
2564241 |
T |
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