View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10706_low_11 (Length: 386)

Name: NF10706_low_11
Description: NF10706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10706_low_11
NF10706_low_11
[»] scaffold0066 (2 HSPs)
scaffold0066 (152-283)||(32979-33108)
scaffold0066 (42-102)||(32874-32934)
[»] chr6 (20 HSPs)
chr6 (284-386)||(16766718-16766825)
chr6 (331-386)||(26562710-26562765)
chr6 (332-386)||(9107354-9107408)
chr6 (284-386)||(12696345-12696446)
chr6 (337-386)||(9522912-9522961)
chr6 (333-381)||(785440-785488)
chr6 (338-386)||(8931592-8931640)
chr6 (331-386)||(5970091-5970146)
chr6 (331-386)||(8714001-8714056)
chr6 (284-386)||(10770609-10770712)
chr6 (331-381)||(8365502-8365552)
chr6 (344-386)||(9911524-9911566)
chr6 (332-381)||(21395292-21395341)
chr6 (348-386)||(7977830-7977868)
chr6 (348-386)||(28152119-28152157)
chr6 (348-386)||(28715316-28715354)
chr6 (348-386)||(34595155-34595193)
chr6 (345-386)||(31384941-31384982)
chr6 (284-335)||(9658945-9658997)
chr6 (331-375)||(22745989-22746033)
[»] chr5 (24 HSPs)
chr5 (284-384)||(21542053-21542158)
chr5 (331-386)||(21522771-21522826)
chr5 (331-386)||(21533337-21533392)
chr5 (290-386)||(17088306-17088402)
chr5 (331-386)||(39698562-39698617)
chr5 (342-386)||(31084344-31084388)
chr5 (338-381)||(21351895-21351938)
chr5 (331-386)||(37328827-37328882)
chr5 (348-386)||(21576745-21576783)
chr5 (284-333)||(23290000-23290049)
chr5 (338-386)||(7677726-7677774)
chr5 (331-379)||(21319928-21319976)
chr5 (331-386)||(19579722-19579777)
chr5 (286-381)||(41633761-41633856)
chr5 (348-386)||(6247643-6247681)
chr5 (348-386)||(8420048-8420086)
chr5 (344-386)||(13287395-13287437)
chr5 (348-386)||(15884009-15884047)
chr5 (344-386)||(16374338-16374380)
chr5 (348-386)||(21191056-21191094)
chr5 (344-386)||(41091253-41091295)
chr5 (354-386)||(7218273-7218305)
chr5 (284-316)||(16304368-16304400)
chr5 (354-386)||(24906307-24906339)
[»] chr7 (26 HSPs)
chr7 (284-386)||(11665371-11665478)
chr7 (284-386)||(9778521-9778622)
chr7 (287-386)||(13770712-13770810)
chr7 (331-386)||(24339663-24339718)
chr7 (283-386)||(26033391-26033499)
chr7 (284-386)||(5409773-5409874)
chr7 (331-379)||(11272569-11272617)
chr7 (339-386)||(18039020-18039067)
chr7 (331-386)||(21560524-21560579)
chr7 (332-386)||(43243098-43243152)
chr7 (284-386)||(2334271-2334377)
chr7 (331-386)||(7438727-7438782)
chr7 (344-386)||(27945062-27945104)
chr7 (331-384)||(6028648-6028701)
chr7 (338-386)||(9408324-9408372)
chr7 (331-379)||(13300438-13300486)
chr7 (342-386)||(32094014-32094058)
chr7 (332-378)||(6630896-6630942)
chr7 (348-386)||(21880173-21880211)
chr7 (331-377)||(25822685-25822731)
chr7 (284-386)||(43027406-43027507)
chr7 (330-386)||(8160437-8160493)
chr7 (342-386)||(17307914-17307958)
chr7 (339-379)||(21930656-21930696)
chr7 (284-316)||(28155639-28155671)
chr7 (284-348)||(29998974-29999038)
[»] chr1 (32 HSPs)
chr1 (284-386)||(47989518-47989625)
chr1 (331-386)||(5376483-5376538)
chr1 (331-386)||(6612154-6612209)
chr1 (284-386)||(1486646-1486747)
chr1 (332-386)||(31694694-31694748)
chr1 (335-386)||(6332691-6332742)
chr1 (331-386)||(44482251-44482306)
chr1 (284-373)||(17778580-17778670)
chr1 (344-386)||(24577182-24577224)
chr1 (329-386)||(15449213-15449270)
chr1 (349-386)||(18190109-18190146)
chr1 (348-384)||(19058856-19058892)
chr1 (284-386)||(25361907-25362010)
chr1 (343-386)||(113320-113363)
chr1 (343-386)||(5944304-5944347)
chr1 (331-386)||(30173745-30173800)
chr1 (344-386)||(1704988-1705030)
chr1 (348-386)||(18337350-18337388)
chr1 (348-386)||(51410046-51410084)
chr1 (349-386)||(1815278-1815315)
chr1 (344-381)||(2218265-2218302)
chr1 (337-386)||(34371734-34371783)
chr1 (349-386)||(40258934-40258971)
chr1 (339-379)||(8010278-8010318)
chr1 (331-379)||(9629883-9629931)
chr1 (354-386)||(21378599-21378631)
chr1 (348-380)||(24334705-24334737)
chr1 (331-379)||(28273071-28273119)
chr1 (354-386)||(31015064-31015096)
chr1 (342-386)||(35919270-35919314)
chr1 (354-386)||(48450593-48450625)
chr1 (337-381)||(48547974-48548018)
[»] chr2 (18 HSPs)
chr2 (284-386)||(11223795-11223901)
chr2 (282-386)||(36756273-36756382)
chr2 (331-386)||(30717513-30717568)
chr2 (338-379)||(4882686-4882727)
chr2 (284-386)||(37419764-37419871)
chr2 (339-386)||(23058433-23058480)
chr2 (341-386)||(12668416-12668461)
chr2 (331-379)||(35056896-35056944)
chr2 (284-335)||(18054718-18054769)
chr2 (348-379)||(20473350-20473381)
chr2 (343-386)||(33153445-33153488)
chr2 (348-386)||(2438719-2438757)
chr2 (348-386)||(19536397-19536435)
chr2 (348-386)||(21624288-21624326)
chr2 (345-386)||(15657885-15657926)
chr2 (348-381)||(18421989-18422022)
chr2 (345-381)||(974773-974809)
chr2 (354-386)||(30404856-30404888)
[»] chr8 (18 HSPs)
chr8 (284-386)||(22651997-22652104)
chr8 (338-386)||(25566862-25566910)
chr8 (331-386)||(2572039-2572094)
chr8 (284-386)||(29447041-29447148)
chr8 (331-381)||(28745524-28745574)
chr8 (348-379)||(15023257-15023288)
chr8 (338-381)||(24362192-24362235)
chr8 (331-386)||(29510287-29510342)
chr8 (348-386)||(4948673-4948711)
chr8 (336-386)||(13436952-13437002)
chr8 (356-386)||(22596015-22596045)
chr8 (348-386)||(24669454-24669492)
chr8 (338-386)||(11927076-11927124)
chr8 (345-385)||(16867202-16867242)
chr8 (354-386)||(18407740-18407772)
chr8 (342-386)||(24858033-24858076)
chr8 (331-386)||(27067283-27067336)
chr8 (354-386)||(40332212-40332244)
[»] chr3 (26 HSPs)
chr3 (331-386)||(14209134-14209189)
chr3 (284-386)||(34910338-34910434)
chr3 (284-379)||(15796225-15796325)
chr3 (338-386)||(16192740-16192788)
chr3 (284-386)||(27505267-27505368)
chr3 (282-386)||(4987220-4987329)
chr3 (338-386)||(1509560-1509608)
chr3 (338-386)||(28812536-28812584)
chr3 (346-386)||(28918022-28918062)
chr3 (342-386)||(49651780-49651824)
chr3 (339-386)||(14829710-14829757)
chr3 (284-386)||(34185054-34185161)
chr3 (337-379)||(8039824-8039866)
chr3 (348-386)||(16000016-16000054)
chr3 (331-381)||(41961633-41961683)
chr3 (345-386)||(4990964-4991005)
chr3 (286-335)||(11666021-11666070)
chr3 (348-381)||(25775535-25775568)
chr3 (283-316)||(25948847-25948880)
chr3 (331-386)||(3610654-3610710)
chr3 (331-379)||(14216920-14216968)
chr3 (331-379)||(14223049-14223097)
chr3 (354-386)||(20503486-20503518)
chr3 (342-386)||(25948881-25948925)
chr3 (354-386)||(26508131-26508163)
chr3 (354-386)||(35994744-35994776)
[»] chr4 (23 HSPs)
chr4 (284-386)||(24613632-24613739)
chr4 (284-386)||(30982809-30982916)
chr4 (285-386)||(28084543-28084640)
chr4 (331-386)||(4383388-4383443)
chr4 (344-379)||(12708175-12708210)
chr4 (331-386)||(51701279-51701334)
chr4 (283-347)||(482184-482248)
chr4 (284-380)||(3947703-3947798)
chr4 (346-386)||(30298968-30299008)
chr4 (346-386)||(30327836-30327876)
chr4 (344-386)||(11596348-11596390)
chr4 (348-386)||(12797338-12797376)
chr4 (332-386)||(13134471-13134525)
chr4 (348-386)||(21945524-21945562)
chr4 (348-386)||(42640550-42640588)
chr4 (340-386)||(46160917-46160963)
chr4 (342-386)||(12895110-12895154)
chr4 (348-380)||(16073421-16073453)
chr4 (341-381)||(19482694-19482734)
chr4 (338-386)||(22234880-22234928)
chr4 (354-386)||(29205465-29205497)
chr4 (338-386)||(47264007-47264055)
chr4 (319-371)||(50280919-50280970)
[»] scaffold0136 (1 HSPs)
scaffold0136 (331-386)||(3832-3887)
[»] scaffold0019 (1 HSPs)
scaffold0019 (284-386)||(71746-71853)
[»] scaffold0223 (1 HSPs)
scaffold0223 (340-386)||(20193-20239)
[»] scaffold0044 (1 HSPs)
scaffold0044 (289-386)||(53201-53303)
[»] scaffold0025 (1 HSPs)
scaffold0025 (345-386)||(23791-23832)
[»] scaffold0171 (2 HSPs)
scaffold0171 (342-386)||(23441-23485)
scaffold0171 (331-386)||(23532-23587)
[»] scaffold0008 (1 HSPs)
scaffold0008 (338-381)||(263362-263405)
[»] scaffold0050 (1 HSPs)
scaffold0050 (348-386)||(70299-70337)
[»] scaffold0083 (1 HSPs)
scaffold0083 (348-381)||(45530-45563)
[»] scaffold0021 (1 HSPs)
scaffold0021 (354-386)||(130503-130535)
[»] scaffold0004 (1 HSPs)
scaffold0004 (349-381)||(123654-123686)


Alignment Details
Target: scaffold0066 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 152 - 283
Target Start/End: Original strand, 32979 - 33108
Alignment:
Q  152 tacgctggttgaagacaaaacgaaggaggcgggcgcgtataagatcagattttcaatcggtttttcatctttcatcccaaaagaagaaaatcttagtcct 251  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||| |||||||||    
T  32979 tacgctggttgaagacaaaacgaaggaggaaggcgcgtataagatcagattttcaatcagtttttcatctttcatcccaaaaga--aaaaccttagtcct 33076  T
Q  252 gcttctgcatcttctgataggagatggtgata 283  Q
    |||||||||| |||||||||||||||||||||    
T  33077 gcttctgcattttctgataggagatggtgata 33108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 32874 - 32934
Alignment:
Q  42 gtttggatagaaagataaggtaagctataattgccacacttttattttaaccgtgactaac 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32874 gtttggatagaaagataaggtaagctataattgccacacttttattttaaccgtgactaac 32934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 284 - 386
Target Start/End: Complemental strand, 16766825 - 16766718
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagacacgtgtt-----cgacaccgacacgacatcgacacttgtaattacactgaatta 378  Q
    ||||||||||||||||| | ||||||| |||||  |||| || ||||||||||     |||||||||||||||| |||||||||||||||||||||||||    
T  16766825 atgaagcacggacattcttcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaatta 16766726  T
Q  379 tgttattt 386  Q
    ||| ||||    
T  16766725 tgtgattt 16766718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 26562765 - 26562710
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||    
T  26562765 cgtgttcgacaccgacacgacatcgacacatataattacactgaattatgtgattt 26562710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 332 - 386
Target Start/End: Original strand, 9107354 - 9107408
Alignment:
Q  332 gtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||| |||||||||||||||| |||||||||||||||||||||||| ||| ||||    
T  9107354 gtgtccgacaccgacacgacaccgacacttgtaattacactgaattttgtgattt 9107408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 386
Target Start/End: Complemental strand, 12696446 - 12696345
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagacacgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgtta 383  Q
    ||||||||| |||| ||||||||| ||  ||||  |||| |||||||||||| ||   |||||||||||  ||||||||||||||||||||||||||| |    
T  12696446 atgaagcacagacactccttggataaggtgtgtcccggtgtcagacacgtgt-cgtgtccgacacgacactgacacttgtaattacactgaattatgtaa 12696348  T
Q  384 ttt 386  Q
    |||    
T  12696347 ttt 12696345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 9522961 - 9522912
Alignment:
Q  337 cgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||||||||||| ||| |||||||||||||||||||||||||||| ||||    
T  9522961 cgacaccgacacaacaccgacacttgtaattacactgaattatgtgattt 9522912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 333 - 381
Target Start/End: Original strand, 785440 - 785488
Alignment:
Q  333 tgttcgacaccgacacgacatcgacacttgtaattacactgaattatgt 381  Q
    |||||||||||||||||||| |||||||||| |||||| ||||||||||    
T  785440 tgttcgacaccgacacgacaccgacacttgtgattacattgaattatgt 785488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 338 - 386
Target Start/End: Original strand, 8931592 - 8931640
Alignment:
Q  338 gacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||||||||||||||||||||| | |||||| |||||||||||||||||    
T  8931592 gacaccgacacgacatcgacacatataattatactgaattatgttattt 8931640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 386
Target Start/End: Original strand, 5970091 - 5970146
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||||||||||||| | ||| |||||||||||||||||||||| ||||    
T  5970091 cgtgtccgacaccgacacgacacccacatttgtaattacactgaattatgtgattt 5970146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 8714056 - 8714001
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||||||||||||| | ||| |||||||||||||||||||||| ||||    
T  8714056 cgtgtccgacaccgacacgacacccacatttgtaattacactgaattatgtgattt 8714001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 386
Target Start/End: Original strand, 10770609 - 10770712
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagacacgtgt-tcgacaccgacacgacatcgacacttgtaattacactgaattatgtt 382  Q
    |||||||||||||| ||||  |||||| | |||  ||| ||| ||||||||| |||   | ||||||||| ||||||||||||||||||||||||||||     
T  10770609 atgaagcacggacactcctcagattaggcatgtcccggcatcggacacgtgtgtcgtgtctgacacgacaccgacacttgtaattacactgaattatgtg 10770708  T
Q  383 attt 386  Q
    ||||    
T  10770709 attt 10770712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 331 - 381
Target Start/End: Original strand, 8365502 - 8365552
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgt 381  Q
    ||||| ||| |||||||||||| |||||||||||||||||| |||||||||    
T  8365502 cgtgtccgataccgacacgacaccgacacttgtaattacaccgaattatgt 8365552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 9911524 - 9911566
Alignment:
Q  344 gacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||| |||||||||||||||||||||||||||| ||||    
T  9911524 gacacgacaccgacacttgtaattacactgaattatgtgattt 9911566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 21395292 - 21395341
Alignment:
Q  332 gtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgt 381  Q
    |||| |||||| ||||||||| ||||||||||||||||||| ||||||||    
T  21395292 gtgtccgacactgacacgacaccgacacttgtaattacactaaattatgt 21395341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 348 - 386
Target Start/End: Original strand, 7977830 - 7977868
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  7977830 cgacaccgacacttgtaattacactgaattatgtaattt 7977868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 348 - 386
Target Start/End: Complemental strand, 28152157 - 28152119
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  28152157 cgacaccgacacttgtaattacactgaattatgtgattt 28152119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 348 - 386
Target Start/End: Complemental strand, 28715354 - 28715316
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  28715354 cgacaccgacacttgtaattacactgaattatgtcattt 28715316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 348 - 386
Target Start/End: Complemental strand, 34595193 - 34595155
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  34595193 cgacaccgacacttgtaattacactgaattatgtgattt 34595155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 31384982 - 31384941
Alignment:
Q  345 acacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||  ||||||||||||||||||||||||||| ||||    
T  31384982 acacgacactgacacttgtaattacactgaattatgtgattt 31384941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 9658997 - 9658945
Alignment:
Q  284 atgaagcacggacattccttgg-attagacgtgttgcggtatcagacacgtgt 335  Q
    |||||||||||||| ||||||| ||||| |||||| |||| ||||||||||||    
T  9658997 atgaagcacggacactccttggaattaggcgtgttccggtgtcagacacgtgt 9658945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 375
Target Start/End: Complemental strand, 22746033 - 22745989
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaa 375  Q
    ||||||||||| |||||||||| |||||||||| |||||| ||||    
T  22746033 cgtgttcgacagcgacacgacaccgacacttgtgattacattgaa 22745989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 384
Target Start/End: Complemental strand, 21542158 - 21542053
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagacacgtgtt-----cgacaccgacacgacatcgacacttgtaattacactgaatta 378  Q
    |||| |||||||||||||||||||| | |||||  |||| || |||||||||      |||||||||||||||| |||||||||||||||||||||||||    
T  21542158 atgatgcacggacattccttggattcggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaatta 21542059  T
Q  379 tgttat 384  Q
    ||||||    
T  21542058 tgttat 21542053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 21522826 - 21522771
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  21522826 cgtgtccgacaccgacacgacaccgacaattgtaattacactgaattatgttattt 21522771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 21533392 - 21533337
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  21533392 cgtgtccgacaccgacacgacaccgacaattgtaattacactgaattatgttattt 21533337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 290 - 386
Target Start/End: Complemental strand, 17088402 - 17088306
Alignment:
Q  290 cacggacattccttggattagacgtgttgcggtatcagacacgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||||||| |||| ||||||| |||||  |||| || ||||||||  ||||||||||||||||  |||||||||||| ||||| |||||||| ||||    
T  17088402 cacggacactcctcggattaggcgtgtcccggtgtcggacacgtgaccgacaccgacacgacagtgacacttgtaatcacactaaattatgtgattt 17088306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 39698617 - 39698562
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||||||||| ||||    
T  39698617 cgtgtccgacaccgacacgacactgacacttgtaattacactgaattatgtgattt 39698562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 342 - 386
Target Start/End: Complemental strand, 31084388 - 31084344
Alignment:
Q  342 ccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||    
T  31084388 ccgacacgacatcgacacttgtaattacattgaattatgtgattt 31084344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 381
Target Start/End: Original strand, 21351895 - 21351938
Alignment:
Q  338 gacaccgacacgacatcgacacttgtaattacactgaattatgt 381  Q
    |||||||||| |||| ||||||||||||||||||||||||||||    
T  21351895 gacaccgacatgacaccgacacttgtaattacactgaattatgt 21351938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 386
Target Start/End: Original strand, 37328827 - 37328882
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||||||||||||| |||||| ||||||||||||||||| ||| ||||    
T  37328827 cgtgtccgacaccgacacgacaccgacacatgtaattacactgaattttgtgattt 37328882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 348 - 386
Target Start/End: Original strand, 21576745 - 21576783
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  21576745 cgacatcgacacttgtaattacactgaattatgtgattt 21576783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 23290000 - 23290049
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagacacgt 333  Q
    |||||||||||||||| ||||||||||||||||  |||| ||||||||||    
T  23290000 atgaagcacggacattgcttggattagacgtgtcccggtgtcagacacgt 23290049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 386
Target Start/End: Complemental strand, 7677774 - 7677726
Alignment:
Q  338 gacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||||||||| |||||||| ||||| ||||||||||||| ||||    
T  7677774 gacaccgacacgacaccgacacttctaattgcactgaattatgtgattt 7677726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 21319928 - 21319976
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattat 379  Q
    ||||| ||||||||||| ||||||||||||||| |||||| ||||||||    
T  21319928 cgtgtccgacaccgacatgacatcgacacttgtgattacattgaattat 21319976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 19579777 - 19579722
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||| ||||||||| |||||||||||||| |||| |||||||| ||||    
T  19579777 cgtgtccgacactgacacgacaccgacacttgtaattgcactaaattatgtgattt 19579722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 381
Target Start/End: Complemental strand, 41633856 - 41633761
Alignment:
Q  286 gaagcacggacattccttggattagacgtgttgcggtatcagacacgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgt 381  Q
    |||||||||| | || ||| |||||| ||||  ||||||| |||| || |   ||||||| |||||| ||||| ||||||||||||||||||||||    
T  41633856 gaagcacggatactctttgaattagatgtgtatcggtatcggacatgtatctaacaccgatacgacaccgacatttgtaattacactgaattatgt 41633761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 348 - 386
Target Start/End: Complemental strand, 6247681 - 6247643
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  6247681 cgacaccgacacttgtaattacactgaattatgtgattt 6247643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 348 - 386
Target Start/End: Complemental strand, 8420086 - 8420048
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  8420086 cgacaccgacacttgtaattacattgaattatgttattt 8420048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 13287395 - 13287437
Alignment:
Q  344 gacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||| ||||||||||| |||||||||||||||| ||||    
T  13287395 gacacgacaccgacacttgtagttacactgaattatgtgattt 13287437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 348 - 386
Target Start/End: Complemental strand, 15884047 - 15884009
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  15884047 cgacaccgacacttgtaattacactgaattatgtgattt 15884009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 16374338 - 16374380
Alignment:
Q  344 gacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||| |||||| |||||||||||||| |||||||||||    
T  16374338 gacacgacaccgacacatgtaattacactgatttatgttattt 16374380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 348 - 386
Target Start/End: Original strand, 21191056 - 21191094
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  21191056 cgacaccgacacttgtaattacactgaattatgtgattt 21191094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 41091253 - 41091295
Alignment:
Q  344 gacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||||||||||||||| | ||||||||||||||||||| ||||    
T  41091253 gacacgacatcgacacatataattacactgaattatgtgattt 41091295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 354 - 386
Target Start/End: Original strand, 7218273 - 7218305
Alignment:
Q  354 cgacacttgtaattacactgaattatgttattt 386  Q
    |||||||||||||||||||||||||||| ||||    
T  7218273 cgacacttgtaattacactgaattatgtgattt 7218305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 316
Target Start/End: Original strand, 16304368 - 16304400
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgt 316  Q
    ||||||||||||||||||| |||||||||||||    
T  16304368 atgaagcacggacattcctcggattagacgtgt 16304400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 354 - 386
Target Start/End: Original strand, 24906307 - 24906339
Alignment:
Q  354 cgacacttgtaattacactgaattatgttattt 386  Q
    |||||||||||||||||||||||||||| ||||    
T  24906307 cgacacttgtaattacactgaattatgtcattt 24906339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 284 - 386
Target Start/End: Original strand, 11665371 - 11665478
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagacacgtg-----ttcgacaccgacacgacatcgacacttgtaattacactgaatta 378  Q
    ||||||||||||||||||| | |||||| ||||| |||| || ||||||||     ||||||||||||| ||||||||||||| |||||| |||||||||    
T  11665371 atgaagcacggacattcctcgtattagatgtgtttcggtgtcggacacgtgtcgtgttcgacaccgacatgacatcgacacttataattagactgaatta 11665470  T
Q  379 tgttattt 386  Q
    ||| ||||    
T  11665471 tgtgattt 11665478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 284 - 386
Target Start/End: Complemental strand, 9778622 - 9778521
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagacacgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgtta 383  Q
    |||||||||||||| |||||||||||| |||||  |||| || |||||||||| |   ||||||||||| ||||||||||||||| |||||||||||| |    
T  9778622 atgaagcacggacactccttggattaggcgtgtcccggtgtcggacacgtgtt-gtgtccgacacgacaccgacacttgtaattatactgaattatgtga 9778524  T
Q  384 ttt 386  Q
    |||    
T  9778523 ttt 9778521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 386
Target Start/End: Complemental strand, 13770810 - 13770712
Alignment:
Q  287 aagcacggacattccttggattagacgtgttgcggtatcagacacgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||||| || | ||||||| |||||| |||| || |||||||||| |   ||||||||||| |||||||||||||||||||||||||||| ||||    
T  13770810 aagcacggacactcttcggattaggcgtgttccggtgtcggacacgtgtt-gtgtccgacacgacaacgacacttgtaattacactgaattatgtaattt 13770712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 24339718 - 24339663
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  24339718 cgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgattt 24339663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 283 - 386
Target Start/End: Original strand, 26033391 - 26033499
Alignment:
Q  283 aatgaagcacggacattccttggattagacgtgttgcggtatcagacacgtgt----tc-gacaccgacacgacatcgacacttgtaattacactgaatt 377  Q
    |||||| |||||||| |||| |||||||  |||| |||||||| |||||||||    || ||||||||||||| | ||||||||||||||||||||||||    
T  26033391 aatgaaacacggacactcctcggattaggtgtgtcgcggtatcggacacgtgtcatgtctgacaccgacacgagaccgacacttgtaattacactgaatt 26033490  T
Q  378 atgttattt 386  Q
    |||| ||||    
T  26033491 atgtgattt 26033499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 284 - 386
Target Start/End: Original strand, 5409773 - 5409874
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagacacgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgtta 383  Q
    |||||||||||||| |||| ||||||| |||||  |||| || ||||||||| ||   ||||||||||| |||||||||||||| ||||||||||||| |    
T  5409773 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgt-cgtgtccgacacgacaccgacacttgtaattgcactgaattatgtga 5409871  T
Q  384 ttt 386  Q
    |||    
T  5409872 ttt 5409874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 11272569 - 11272617
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattat 379  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  11272569 cgtgtccgacaccgacacgacaccgacacttgtaattacactgaattat 11272617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 339 - 386
Target Start/End: Complemental strand, 18039067 - 18039020
Alignment:
Q  339 acaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  18039067 acaccgacacgacaccgacacttgtaattacactgaattatgtgattt 18039020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 21560579 - 21560524
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||||| |||||||| |||||| |||||||||||||||||||||||||||| ||||    
T  21560579 cgtgtttgacaccgatacgacaccgacacttgtaattacactgaattatgtgattt 21560524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 332 - 386
Target Start/End: Complemental strand, 43243152 - 43243098
Alignment:
Q  332 gtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||||||||||  |||||||||||||||||||||||||| | |||||||||||||    
T  43243152 gtgttcgacacaaacacgacatcgacacttgtaattacattaaattatgttattt 43243098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 386
Target Start/End: Complemental strand, 2334377 - 2334271
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagaca-----cgtgttcgacaccgacacgacatcgacacttgtaattacactgaatta 378  Q
    ||||| |||||||| |||| |||||||||||||| | || || ||||     ||||| |||||| ||||||||| ||||||||||||||||||| |||||    
T  2334377 atgaaacacggacactcctcggattagacgtgtttcagtgtcggacatgtgtcgtgtccgacac-gacacgacaccgacacttgtaattacactaaatta 2334279  T
Q  379 tgttattt 386  Q
    ||| ||||    
T  2334278 tgtgattt 2334271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 7438782 - 7438727
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||||| |||||||||| |||| ||||||||||||||||| |||||||||| ||||    
T  7438782 cgtgtttgacaccgacatgacaccgacacttgtaattacattgaattatgtgattt 7438727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 27945104 - 27945062
Alignment:
Q  344 gacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||| |||||||||||||||||||||||||||| ||||    
T  27945104 gacacgacaccgacacttgtaattacactgaattatgtaattt 27945062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 384
Target Start/End: Complemental strand, 6028701 - 6028648
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttat 384  Q
    |||||||||||| ||||||||| ||||| ||||||||||| | |||||||||||    
T  6028701 cgtgttcgacactgacacgacaccgacatttgtaattacattaaattatgttat 6028648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 386
Target Start/End: Original strand, 9408324 - 9408372
Alignment:
Q  338 gacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||||||| |||||| ||||||||||||||||||| |||||||| ||||    
T  9408324 gacaccgatacgacaccgacacttgtaattacactaaattatgtgattt 9408372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 13300486 - 13300438
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattat 379  Q
    ||||||||||||||||| |||| ||| ||| ||||||||||||||||||    
T  13300486 cgtgttcgacaccgacatgacaccgagactggtaattacactgaattat 13300438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 386
Target Start/End: Original strand, 32094014 - 32094058
Alignment:
Q  342 ccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||||    
T  32094014 ccgacacgacaccgacatttgtaattacactgaattatgtgattt 32094058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 378
Target Start/End: Original strand, 6630896 - 6630942
Alignment:
Q  332 gtgttcgacaccgacacgacatcgacacttgtaattacactgaatta 378  Q
    |||| ||||||| ||||||||||||||| | ||||||||||||||||    
T  6630896 gtgtccgacaccaacacgacatcgacacatataattacactgaatta 6630942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 348 - 386
Target Start/End: Complemental strand, 21880211 - 21880173
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  21880211 cgacaccgacacttgtaattacactgaattatgtaattt 21880173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 331 - 377
Target Start/End: Complemental strand, 25822731 - 25822685
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaatt 377  Q
    ||||| ||| ||||| |||||| ||||||||||||||||||||||||    
T  25822731 cgtgtccgataccgatacgacaccgacacttgtaattacactgaatt 25822685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 386
Target Start/End: Original strand, 43027406 - 43027507
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagacacgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgtta 383  Q
    |||||||||||||| || | ||||||| |||||  |||| || ||||||||| ||   | ||||||||| ||||||||||| |||||||| ||||||| |    
T  43027406 atgaagcacggacactcatcggattaggcgtgtcccggtgtcggacacgtgt-cgtgtctgacacgacaccgacacttgtatttacactgcattatgtga 43027504  T
Q  384 ttt 386  Q
    |||    
T  43027505 ttt 43027507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 386
Target Start/End: Complemental strand, 8160493 - 8160437
Alignment:
Q  330 acgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||||||||||||||| | | |||| | |||||||||| |||||||| ||||    
T  8160493 acgtgttcgacaccgacacgataccaacacatataattacactaaattatgtaattt 8160437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 386
Target Start/End: Complemental strand, 17307958 - 17307914
Alignment:
Q  342 ccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||||| | |||| | ||||||||||||||||||||||||    
T  17307958 ccgacacgacaccaacacatataattacactgaattatgttattt 17307914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 339 - 379
Target Start/End: Complemental strand, 21930696 - 21930656
Alignment:
Q  339 acaccgacacgacatcgacacttgtaattacactgaattat 379  Q
    |||| ||||||||||||||||||||||||| | ||||||||    
T  21930696 acactgacacgacatcgacacttgtaattaaaatgaattat 21930656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 316
Target Start/End: Complemental strand, 28155671 - 28155639
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgt 316  Q
    ||||||||||||||||||||||||||| |||||    
T  28155671 atgaagcacggacattccttggattaggcgtgt 28155639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 348
Target Start/End: Original strand, 29998974 - 29999038
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagacacgtgttcgacaccgacac 348  Q
    |||||||| ||||| ||||  |||||||||||||  ||| || ||||||||| ||||||||||||    
T  29998974 atgaagcatggacactcctccgattagacgtgtttaggtgtcggacacgtgtccgacaccgacac 29999038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 284 - 386
Target Start/End: Complemental strand, 47989625 - 47989518
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagaca-----cgtgttcgacaccgacacgacatcgacacttgtaattacactgaatta 378  Q
    |||||||||||||| |||| ||||||| |||||  || | |||||||     ||||| |||||||||||||||| |||||||||||||||||||||||||    
T  47989625 atgaagcacggacactcctcggattaggcgtgtcccgatgtcagacatgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaatta 47989526  T
Q  379 tgttattt 386  Q
    ||| ||||    
T  47989525 tgtgattt 47989518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 331 - 386
Target Start/End: Original strand, 5376483 - 5376538
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| ||||| |||||||||| |||||||| ||||||||||||||||||||||||    
T  5376483 cgtgtccgacatcgacacgacaccgacacttttaattacactgaattatgttattt 5376538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 331 - 386
Target Start/End: Original strand, 6612154 - 6612209
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| ||||| |||||||||| |||||||||||||||||||||||||||| ||||    
T  6612154 cgtgtccgacatcgacacgacaccgacacttgtaattacactgaattatgtaattt 6612209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 386
Target Start/End: Original strand, 1486646 - 1486747
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagacacgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgtta 383  Q
    ||||||||| |||| |||| ||||||| |||||  |||| || ||||||||| ||   ||||||||||| |||||||| ||||||||||||||||||| |    
T  1486646 atgaagcacagacactcctcggattaggcgtgtcccggtgtcggacacgtgt-cgtgtccgacacgacaccgacacttataattacactgaattatgtga 1486744  T
Q  384 ttt 386  Q
    |||    
T  1486745 ttt 1486747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 332 - 386
Target Start/End: Original strand, 31694694 - 31694748
Alignment:
Q  332 gtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||| |||||||||||||||| ||||||||||||||| |||||||||||| ||||    
T  31694694 gtgtccgacaccgacacgacaccgacacttgtaattatactgaattatgtgattt 31694748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 386
Target Start/End: Complemental strand, 6332742 - 6332691
Alignment:
Q  335 ttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||| |||||||| ||| |||||||||||||||||||||||| ||||    
T  6332742 ttcgacaccaacacgacaccgatacttgtaattacactgaattatgtgattt 6332691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 44482306 - 44482251
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||||||||||||| |||||| | ||||||||||||||||||| ||||    
T  44482306 cgtgtccgacaccgacacgacaccgacacatataattacactgaattatgtgattt 44482251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 373
Target Start/End: Complemental strand, 17778670 - 17778580
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagacacgtgtt-cgacaccgacacgacatcgacacttgtaattacactg 373  Q
    |||||||||| ||| | || ||||||| | |||  |||| || |||||||||  |||||||||||||||| ||||||||||||||||||||    
T  17778670 atgaagcacgaacacttctcggattaggcatgtcccggtgtcggacacgtgtcgcgacaccgacacgacaccgacacttgtaattacactg 17778580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 24577182 - 24577224
Alignment:
Q  344 gacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||| |||||||||||||||||||||||||||| ||||    
T  24577182 gacacgacaccgacacttgtaattacactgaattatgtgattt 24577224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 386
Target Start/End: Original strand, 15449213 - 15449270
Alignment:
Q  329 cacgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||| ||||||||| ||||||  |||||||||||||||||| |||||||| ||||    
T  15449213 cacgtgtccgacaccgatacgacacagacacttgtaattacactaaattatgtgattt 15449270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 386
Target Start/End: Original strand, 18190109 - 18190146
Alignment:
Q  349 gacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  18190109 gacatcgacacttgtaattacactgaattatgtaattt 18190146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 384
Target Start/End: Original strand, 19058856 - 19058892
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatgttat 384  Q
    ||||| |||||||||||||||||||||||||||||||    
T  19058856 cgacaccgacacttgtaattacactgaattatgttat 19058892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 386
Target Start/End: Complemental strand, 25362010 - 25361907
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagaca---cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatg 380  Q
    |||||||||||||| || | |||||||  ||||| |||| || ||||   ||||| ||||||||||||||||  ||||| | ||||||||||||||||||    
T  25362010 atgaagcacggacactcttcggattag--gtgttccggtgtcggacatgtcgtgtccgacaccgacacgacactgacacatataattacactgaattatg 25361913  T
Q  381 ttattt 386  Q
    | ||||    
T  25361912 tgattt 25361907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 113363 - 113320
Alignment:
Q  343 cgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||||||||| | |||||||||||||||||||||||||| ||||    
T  113363 cgacacgacacctacacttgtaattacactgaattatgtgattt 113320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 5944347 - 5944304
Alignment:
Q  343 cgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||||||||| |||||||| ||||||||||||||||||| ||||    
T  5944347 cgacacgacaccgacacttataattacactgaattatgtgattt 5944304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 386
Target Start/End: Original strand, 30173745 - 30173800
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| ||| || ||||||||| ||||||||||||||||||||| |||||| ||||    
T  30173745 cgtgtccgatacggacacgacaccgacacttgtaattacactgagttatgtaattt 30173800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 1704988 - 1705030
Alignment:
Q  344 gacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||| |||||||||||||||| ||||||||||| ||||    
T  1704988 gacacgacaccgacacttgtaattaccctgaattatgtgattt 1705030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 348 - 386
Target Start/End: Complemental strand, 18337388 - 18337350
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  18337388 cgacaccgacacttgtaattacactgaattatgtgattt 18337350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 348 - 386
Target Start/End: Complemental strand, 51410084 - 51410046
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  51410084 cgacaccgacacttgtaattacactgaattatgtgattt 51410046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 386
Target Start/End: Complemental strand, 1815315 - 1815278
Alignment:
Q  349 gacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  1815315 gacaccgacacttgtaattacactgaattatgtgattt 1815278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 381
Target Start/End: Complemental strand, 2218302 - 2218265
Alignment:
Q  344 gacacgacatcgacacttgtaattacactgaattatgt 381  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  2218302 gacacgacaccgacacttgtaattacactaaattatgt 2218265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 34371783 - 34371734
Alignment:
Q  337 cgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||| |||||||| |||||| | ||||||||||||||||||| ||||    
T  34371783 cgacaccaacacgacaccgacacatataattacactgaattatgtgattt 34371734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 386
Target Start/End: Original strand, 40258934 - 40258971
Alignment:
Q  349 gacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  40258934 gacaccgacacttgtaattacactgaattatgtgattt 40258971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 339 - 379
Target Start/End: Original strand, 8010278 - 8010318
Alignment:
Q  339 acaccgacacgacatcgacacttgtaattacactgaattat 379  Q
    |||||||||| |||||||||||| |||||| ||||||||||    
T  8010278 acaccgacacaacatcgacacttataattatactgaattat 8010318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 9629883 - 9629931
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattat 379  Q
    ||||| ||||| |||||||||| |||||||| |||| ||||||||||||    
T  9629883 cgtgtccgacatcgacacgacaccgacacttataatcacactgaattat 9629931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 354 - 386
Target Start/End: Complemental strand, 21378631 - 21378599
Alignment:
Q  354 cgacacttgtaattacactgaattatgttattt 386  Q
    |||||||||||||||||||||||||||| ||||    
T  21378631 cgacacttgtaattacactgaattatgtaattt 21378599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 348 - 380
Target Start/End: Original strand, 24334705 - 24334737
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatg 380  Q
    ||||| |||||||||||||||||||||||||||    
T  24334705 cgacaccgacacttgtaattacactgaattatg 24334737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 28273071 - 28273119
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattat 379  Q
    ||||| ||||| ||| | |||| ||||||||||||||||||||||||||    
T  28273071 cgtgtccgacatcgataggacaccgacacttgtaattacactgaattat 28273119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 354 - 386
Target Start/End: Complemental strand, 31015096 - 31015064
Alignment:
Q  354 cgacacttgtaattacactgaattatgttattt 386  Q
    |||||||||||||||||||||||||||| ||||    
T  31015096 cgacacttgtaattacactgaattatgtgattt 31015064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 386
Target Start/End: Original strand, 35919270 - 35919314
Alignment:
Q  342 ccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||||||||||  ||||||| ||||||||||||||||||| ||||    
T  35919270 ccgacacgacacggacacttataattacactgaattatgtgattt 35919314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 354 - 386
Target Start/End: Original strand, 48450593 - 48450625
Alignment:
Q  354 cgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||||||||||||| |||||||||||||    
T  48450593 cgacacttgtaattacactaaattatgttattt 48450625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 381
Target Start/End: Original strand, 48547974 - 48548018
Alignment:
Q  337 cgacaccgacacgacatcgacacttgtaattacactgaattatgt 381  Q
    |||||||||||||||| | | ||||||||||||| ||||||||||    
T  48547974 cgacaccgacacgacaccaatacttgtaattacattgaattatgt 48548018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 386
Target Start/End: Original strand, 11223795 - 11223901
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagaca----cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattat 379  Q
    |||||||||||||| ||||  |||||| |||||  |||| |||||||    ||||| ||||||| ||| |||| ||||||||||||||||||||||||||    
T  11223795 atgaagcacggacactcctcagattaggcgtgtcccggtgtcagacagtgtcgtgtccgacacctacatgacaccgacacttgtaattacactgaattat 11223894  T
Q  380 gttattt 386  Q
    |||||||    
T  11223895 gttattt 11223901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 282 - 386
Target Start/End: Original strand, 36756273 - 36756382
Alignment:
Q  282 taatgaagcacggacattccttggattagacgtgttgcggtatcagaca-----cgtgttcgacaccgacacgacatcgacacttgtaattacactgaat 376  Q
    ||||||||||| |||| |||| ||||||| ||||||||||| || ||||      |||||||||||  |||||||| |||||||| ||||||||||||||    
T  36756273 taatgaagcacagacactcctaggattaggcgtgttgcggtgtcggacatgtgttgtgttcgacactaacacgacaccgacacttataattacactgaat 36756372  T
Q  377 tatgttattt 386  Q
    ||||||||||    
T  36756373 tatgttattt 36756382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 331 - 386
Target Start/End: Original strand, 30717513 - 30717568
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  30717513 cgtgtccgacaacgacacgacatcgacacttgtaattacactgaattatgtgattt 30717568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 4882686 - 4882727
Alignment:
Q  338 gacaccgacacgacatcgacacttgtaattacactgaattat 379  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4882686 gacaccgacacgacatcgacacttgtaattacactgaattat 4882727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 284 - 386
Target Start/End: Complemental strand, 37419871 - 37419764
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagaca-----cgtgttcgacaccgacacgacatcgacacttgtaattacactgaatta 378  Q
    |||||||||||||| |||| ||||||| |||||  |||| || ||||     ||||| |||||||||||||||| || |||||||||||||||||||||     
T  37419871 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgcatcgtgtccgacaccgacacgacaccggcacttgtaattacactgaattt 37419772  T
Q  379 tgttattt 386  Q
    ||| ||||    
T  37419771 tgtgattt 37419764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 386
Target Start/End: Original strand, 23058433 - 23058480
Alignment:
Q  339 acaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||||||||||||| |||||||||||||||||||| ||||||| ||||    
T  23058433 acaccgacacgacaccgacacttgtaattacactggattatgtgattt 23058480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 386
Target Start/End: Original strand, 12668416 - 12668461
Alignment:
Q  341 accgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||||||||||| |||||||| ||||||||||||||||||| ||||    
T  12668416 accgacacgacaccgacacttataattacactgaattatgtcattt 12668461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 35056944 - 35056896
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattat 379  Q
    ||||| |||||||||||||||| |||||| | |||||||||||||||||    
T  35056944 cgtgtccgacaccgacacgacaccgacacatataattacactgaattat 35056896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 335
Target Start/End: Original strand, 18054718 - 18054769
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagacacgtgt 335  Q
    |||||||||||||||||||||||| || |||||| | || ||||||||||||    
T  18054718 atgaagcacggacattccttggataaggcgtgtttccgtgtcagacacgtgt 18054769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 348 - 379
Target Start/End: Complemental strand, 20473381 - 20473350
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattat 379  Q
    ||||||||||||||||||||||||||||||||    
T  20473381 cgacatcgacacttgtaattacactgaattat 20473350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 33153488 - 33153445
Alignment:
Q  343 cgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||||  ||||||||||||||||||||||||||| ||||    
T  33153488 cgacacgacacggacacttgtaattacactgaattatgtgattt 33153445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 348 - 386
Target Start/End: Original strand, 2438719 - 2438757
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  2438719 cgacaccgacacttgtaattacactgaattatgtgattt 2438757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 348 - 386
Target Start/End: Original strand, 19536397 - 19536435
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  19536397 cgacaccgacacttgtaattacactgaattatgtgattt 19536435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 348 - 386
Target Start/End: Complemental strand, 21624326 - 21624288
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  21624326 cgacaccgacacttgtaattacactgaattatgctattt 21624288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 15657926 - 15657885
Alignment:
Q  345 acacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||||||| ||||| |||||||||||||||||||||| ||||    
T  15657926 acacgacaccgacatttgtaattacactgaattatgtgattt 15657885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 381
Target Start/End: Complemental strand, 18422022 - 18421989
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatgt 381  Q
    ||||| ||||||||||||||||||||||||||||    
T  18422022 cgacaccgacacttgtaattacactgaattatgt 18421989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 381
Target Start/End: Complemental strand, 974809 - 974773
Alignment:
Q  345 acacgacatcgacacttgtaattacactgaattatgt 381  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  974809 acacgacaccgacacttgtaattacactgaataatgt 974773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 354 - 386
Target Start/End: Original strand, 30404856 - 30404888
Alignment:
Q  354 cgacacttgtaattacactgaattatgttattt 386  Q
    |||||||||||||||||||||||||||| ||||    
T  30404856 cgacacttgtaattacactgaattatgtgattt 30404888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 284 - 386
Target Start/End: Complemental strand, 22652104 - 22651997
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagacac-----gtgttcgacaccgacacgacatcgacacttgtaattacactgaatta 378  Q
    |||||||||||||| |||| |||||||||||||  |||| || |||||     |||| |||||||||||||||| ||||||||||||||| | |||||||    
T  22652104 atgaagcacggacactcctcggattagacgtgtcccggtgtcggacacatgtcgtgtccgacaccgacacgacaccgacacttgtaattatattgaatta 22652005  T
Q  379 tgttattt 386  Q
    ||| ||||    
T  22652004 tgtgattt 22651997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 338 - 386
Target Start/End: Complemental strand, 25566910 - 25566862
Alignment:
Q  338 gacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  25566910 gacaccaacacgacaccgacacttgtaattacactgaattatgtgattt 25566862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 386
Target Start/End: Original strand, 2572039 - 2572094
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||| ||||||||| ||||||||||||||||||| |||||||| ||||    
T  2572039 cgtgtccgacacagacacgacaccgacacttgtaattacactaaattatgtgattt 2572094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 386
Target Start/End: Original strand, 29447041 - 29447148
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagacac-----gtgttcgacaccgacacgacatcgacacttgtaattacactgaatta 378  Q
    |||||||||||||| |||| ||||||| |||||   ||| ||||||||     |||| ||||||||||| |||| ||||||||||| ||||| |||||||    
T  29447041 atgaagcacggacactcctaggattaggcgtgtcctggtgtcagacacatgtcgtgtccgacaccgacatgacaccgacacttgtagttacattgaatta 29447140  T
Q  379 tgttattt 386  Q
    ||| ||||    
T  29447141 tgtgattt 29447148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 28745574 - 28745524
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgt 381  Q
    ||||| |||||||||||||||||||||| ||||| ||||| ||||||||||    
T  28745574 cgtgtccgacaccgacacgacatcgacatttgtagttacattgaattatgt 28745524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 348 - 379
Target Start/End: Original strand, 15023257 - 15023288
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattat 379  Q
    ||||||||||||||||||||||||||||||||    
T  15023257 cgacatcgacacttgtaattacactgaattat 15023288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 381
Target Start/End: Original strand, 24362192 - 24362235
Alignment:
Q  338 gacaccgacacgacatcgacacttgtaattacactgaattatgt 381  Q
    |||||||||||||||| ||||| | |||||||||||||||||||    
T  24362192 gacaccgacacgacattgacacatataattacactgaattatgt 24362235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 386
Target Start/End: Original strand, 29510287 - 29510342
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||||||||| ||| ||||||||||||||| |||||||| ||| ||||    
T  29510287 cgtgtccgacaccgacactacaccgacacttgtaattatactgaattttgtgattt 29510342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 348 - 386
Target Start/End: Complemental strand, 4948711 - 4948673
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  4948711 cgacaccgacacttgtaattacactgaattatgtgattt 4948673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 386
Target Start/End: Original strand, 13436952 - 13437002
Alignment:
Q  336 tcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||||||||||| |||||||||| |||||  |||||||||| ||||    
T  13436952 tcgacaccgacacgacaccgacacttgttattaccatgaattatgtgattt 13437002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 356 - 386
Target Start/End: Complemental strand, 22596045 - 22596015
Alignment:
Q  356 acacttgtaattacactgaattatgttattt 386  Q
    |||||||||||||||||||||||||||||||    
T  22596045 acacttgtaattacactgaattatgttattt 22596015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 348 - 386
Target Start/End: Complemental strand, 24669492 - 24669454
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  24669492 cgacaccgacacttgtaattacactgaattatgtaattt 24669454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 386
Target Start/End: Original strand, 11927076 - 11927124
Alignment:
Q  338 gacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||||| |||||||| |||||| | ||||||||||||||||||| ||||    
T  11927076 gacaccaacacgacaccgacacatataattacactgaattatgtgattt 11927124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 385
Target Start/End: Original strand, 16867202 - 16867242
Alignment:
Q  345 acacgacatcgacacttgtaattacactgaattatgttatt 385  Q
    |||||||| |||||||| |||||||||| ||||||||||||    
T  16867202 acacgacaccgacacttataattacactaaattatgttatt 16867242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 354 - 386
Target Start/End: Complemental strand, 18407772 - 18407740
Alignment:
Q  354 cgacacttgtaattacactgaattatgttattt 386  Q
    |||||||||||||||||||||||||||| ||||    
T  18407772 cgacacttgtaattacactgaattatgtgattt 18407740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 386
Target Start/End: Complemental strand, 24858076 - 24858033
Alignment:
Q  342 ccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||||| |||||||||| ||||||||||||||||| ||||    
T  24858076 ccgacacgacaacgacacttgt-attacactgaattatgtgattt 24858033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 386
Target Start/End: Original strand, 27067283 - 27067336
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| ||||||||||||||||  ||||||||||||||||  ||||||||| ||||    
T  27067283 cgtgtccgacaccgacacgacactgacacttgtaattaca--gaattatgtaattt 27067336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 354 - 386
Target Start/End: Complemental strand, 40332244 - 40332212
Alignment:
Q  354 cgacacttgtaattacactgaattatgttattt 386  Q
    |||||||||||||||||||||||||||| ||||    
T  40332244 cgacacttgtaattacactgaattatgtgattt 40332212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 14209189 - 14209134
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||||||||| ||||    
T  14209189 cgtgtccgacaccgacacgacactgacacttgtaattacactgaattatgtgattt 14209134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 284 - 386
Target Start/End: Complemental strand, 34910434 - 34910338
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagacacgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgtta 383  Q
    |||||||||||||| |||| |||||||||||||  |||| |||      ||| ||||||||| |||||| |||| ||||||||||||||||||||||| |    
T  34910434 atgaagcacggacactcctcggattagacgtgtcccggtgtca------tgtccgacaccgatacgacaccgactcttgtaattacactgaattatgtga 34910341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 284 - 379
Target Start/End: Original strand, 15796225 - 15796325
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagacacgtgtt-----cgacaccgacacgacatcgacacttgtaattacactgaatta 378  Q
    |||||||||| ||| || ||||||||| |||||| |||| |  ||||||||||     ||||||| |||||||| ||||| |||||||||||||||||||    
T  15796225 atgaagcacgaacactctttggattaggcgtgttccggtgttggacacgtgttgtgtccgacacctacacgacaccgacaattgtaattacactgaatta 15796324  T
Q  379 t 379  Q
    |    
T  15796325 t 15796325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 338 - 386
Target Start/End: Original strand, 16192740 - 16192788
Alignment:
Q  338 gacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||||||||||| |||| | ||||||||||||||||||||||||    
T  16192740 gacaccgacacgacatcaacacatataattacactgaattatgttattt 16192788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 386
Target Start/End: Complemental strand, 27505368 - 27505267
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagacacgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgtta 383  Q
    |||||||||||||| |||| ||||||| | |||  |||| || ||||||||| ||   | ||||||||| ||||||||||||||||||| |||||||| |    
T  27505368 atgaagcacggacactcctcggattaggcatgtcccggtgtcggacacgtgt-cgtgtcagacacgacaccgacacttgtaattacacttaattatgtga 27505270  T
Q  384 ttt 386  Q
    |||    
T  27505269 ttt 27505267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 386
Target Start/End: Original strand, 4987220 - 4987329
Alignment:
Q  282 taatgaagcacggacattccttggattagacgtgttgcggtatcagacacgtgtt-----cgacaccgacacgacatcgacacttgtaattacactgaat 376  Q
    |||||||| ||||||| |||| ||||||| |||||  |||| || |||||||||      | ||||||||||| || | |||||||||||||||||||||    
T  4987220 taatgaagtacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacgtcaccaacacttgtaattacactgaat 4987319  T
Q  377 tatgttattt 386  Q
    ||||| ||||    
T  4987320 tatgtgattt 4987329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 386
Target Start/End: Complemental strand, 1509608 - 1509560
Alignment:
Q  338 gacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||||||| |||||| ||||||||||||||||||| |||||||| ||||    
T  1509608 gacaccgaaacgacaccgacacttgtaattacactaaattatgtgattt 1509560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 386
Target Start/End: Complemental strand, 28812584 - 28812536
Alignment:
Q  338 gacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||||| |||||||| |||||||||||| ||||||||||||||| ||||    
T  28812584 gacaccaacacgacaccgacacttgtaactacactgaattatgtgattt 28812536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 28918062 - 28918022
Alignment:
Q  346 cacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||| |||||||||||||||||||||||||||| ||||    
T  28918062 cacgacaccgacacttgtaattacactgaattatgtgattt 28918022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 386
Target Start/End: Original strand, 49651780 - 49651824
Alignment:
Q  342 ccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||||| ||||||||||||||||| |||||||||| ||||    
T  49651780 ccgacacgacaccgacacttgtaattacagtgaattatgtgattt 49651824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 386
Target Start/End: Complemental strand, 14829757 - 14829710
Alignment:
Q  339 acaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||||||||||||| ||||||||||||||||  |||||||||| ||||    
T  14829757 acaccgacacgacaccgacacttgtaattaccatgaattatgtgattt 14829710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 386
Target Start/End: Original strand, 34185054 - 34185161
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagacacgtgtt-----cgacaccgacacgacatcgacacttgtaattacactgaatta 378  Q
    |||||||||||||| |||| ||||||| |||||  |||| || ||||| |||      |||||  ||||||||| ||||||||||||||||||||||||     
T  34185054 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacatgtcttgtccgacatggacacgacaccgacacttgtaattacactgaattg 34185153  T
Q  379 tgttattt 386  Q
    ||| ||||    
T  34185154 tgtgattt 34185161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 337 - 379
Target Start/End: Original strand, 8039824 - 8039866
Alignment:
Q  337 cgacaccgacacgacatcgacacttgtaattacactgaattat 379  Q
    |||||||||||||||| |||||| | |||||||||||||||||    
T  8039824 cgacaccgacacgacaccgacacatataattacactgaattat 8039866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 348 - 386
Target Start/End: Original strand, 16000016 - 16000054
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  16000016 cgacaccgacacttgtagttacactgaattatgttattt 16000054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 331 - 381
Target Start/End: Original strand, 41961633 - 41961683
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgt 381  Q
    ||||| ||| |||||||||||| |||||||||||||||||| |||| ||||    
T  41961633 cgtgtccgataccgacacgacaccgacacttgtaattacaccgaataatgt 41961683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 4990964 - 4991005
Alignment:
Q  345 acacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||||||  |||||||||||||||||||||||||||| ||||    
T  4990964 acacgacgccgacacttgtaattacactgaattatgtaattt 4991005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 11666070 - 11666021
Alignment:
Q  286 gaagcacggacattccttggattagacgtgttgcggtatcagacacgtgt 335  Q
    |||||||||||| |||||| ||||| |||||| || ||||||||||||||    
T  11666070 gaagcacggacactccttgaattaggcgtgttccgatatcagacacgtgt 11666021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 381
Target Start/End: Complemental strand, 25775568 - 25775535
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatgt 381  Q
    ||||| ||||||||||||||||||||||||||||    
T  25775568 cgacaccgacacttgtaattacactgaattatgt 25775535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 316
Target Start/End: Original strand, 25948847 - 25948880
Alignment:
Q  283 aatgaagcacggacattccttggattagacgtgt 316  Q
    ||||||||||||||||||||||||||| ||||||    
T  25948847 aatgaagcacggacattccttggattacacgtgt 25948880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 3610710 - 3610654
Alignment:
Q  331 cgtgttcgacaccgacacg-acatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| ||||||||| ||| ||| ||||||| ||||||||||||| |||||||||||    
T  3610710 cgtgtccgacaccgatacggacaacgacactggtaattacactgagttatgttattt 3610654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 14216968 - 14216920
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattat 379  Q
    ||||| ||||||  ||||||||  |||||||||||||||||||||||||    
T  14216968 cgtgtccgacactaacacgacacggacacttgtaattacactgaattat 14216920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 14223097 - 14223049
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattat 379  Q
    ||||| ||||||  ||||||||  |||||||||||||||||||||||||    
T  14223097 cgtgtccgacactaacacgacacggacacttgtaattacactgaattat 14223049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 354 - 386
Target Start/End: Complemental strand, 20503518 - 20503486
Alignment:
Q  354 cgacacttgtaattacactgaattatgttattt 386  Q
    |||||||||||||||||||||||||||| ||||    
T  20503518 cgacacttgtaattacactgaattatgtcattt 20503486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 386
Target Start/End: Original strand, 25948881 - 25948925
Alignment:
Q  342 ccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||||| | |||||| ||||||||||||||||||| ||||    
T  25948881 ccgacacgacaccaacacttataattacactgaattatgtgattt 25948925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 354 - 386
Target Start/End: Complemental strand, 26508163 - 26508131
Alignment:
Q  354 cgacacttgtaattacactgaattatgttattt 386  Q
    |||||||||||||||||||||||||||| ||||    
T  26508163 cgacacttgtaattacactgaattatgtgattt 26508131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 354 - 386
Target Start/End: Original strand, 35994744 - 35994776
Alignment:
Q  354 cgacacttgtaattacactgaattatgttattt 386  Q
    |||||||||||||||||||||||||||| ||||    
T  35994744 cgacacttgtaattacactgaattatgtgattt 35994776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 386
Target Start/End: Original strand, 24613632 - 24613739
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagacacgtgt----tc-gacaccgacacgacatcgacacttgtaattacactgaatta 378  Q
    |||||||||||||| |||| |||||||||||||   ||| ||||||||||||    || |||||||||| |||| ||||||||||| ||||| |||||||    
T  24613632 atgaagcacggacactcctaggattagacgtgtcctggtgtcagacacgtgtcgtgtctgacaccgacatgacaccgacacttgtacttacattgaatta 24613731  T
Q  379 tgttattt 386  Q
    ||| ||||    
T  24613732 tgtgattt 24613739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 386
Target Start/End: Original strand, 30982809 - 30982916
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagacacgtgt----tc-gacaccgacacgacatcgacacttgtaattacactgaatta 378  Q
    |||||||||||||| || ||||||||| |||||  |||| || |||||||||    || ||||||||||||||| |||||||| ||||||||||||| ||    
T  30982809 atgaagcacggacactctttggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacgacaccgacacttataattacactgaaata 30982908  T
Q  379 tgttattt 386  Q
    ||| ||||    
T  30982909 tgtgattt 30982916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 285 - 386
Target Start/End: Complemental strand, 28084640 - 28084543
Alignment:
Q  285 tgaagcacggacattccttggattagacgtgttgcggtatcagacacgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttat 384  Q
    ||||||||||||| |||| ||||||| |||||  | || || |||||||||    |||||||||||||  |||||||||||||||| |||||||||| ||    
T  28084640 tgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgt----caccgacacgacacagacacttgtaattacattgaattatgtgat 28084545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 4383443 - 4383388
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||||| |||||||||||||||  |||| |||||||||||||||||||||| ||||    
T  4383443 cgtgtttgacaccgacacgacactgacatttgtaattacactgaattatgtgattt 4383388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 379
Target Start/End: Complemental strand, 12708210 - 12708175
Alignment:
Q  344 gacacgacatcgacacttgtaattacactgaattat 379  Q
    ||||||||||||||||||||||||||||||||||||    
T  12708210 gacacgacatcgacacttgtaattacactgaattat 12708175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 51701334 - 51701279
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||||||||||||||||   ||||||||||||||||| |||||||| ||||    
T  51701334 cgtgttcgacaccgacacgacactaacacttgtaattacactcaattatgtaattt 51701279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 482184 - 482248
Alignment:
Q  283 aatgaagcacggacattccttggattagacgtgttgcggtatcagacacgtgttcgacaccgaca 347  Q
    ||||||||| ||||| || | ||||||||||||||  ||| |||||||||||| |||||||||||    
T  482184 aatgaagcatggacactcatcggattagacgtgttcaggtgtcagacacgtgtccgacaccgaca 482248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 380
Target Start/End: Original strand, 3947703 - 3947798
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagacacgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatg 380  Q
    |||||||||||||| |||| |||||||  ||||   ||| || ||||||||| ||   |||||||||||  ||||||||||||||||||||||||||    
T  3947703 atgaagcacggacactcctcggattaggtgtgtcctggtgtcggacacgtgt-cgtgtccgacacgacactgacacttgtaattacactgaattatg 3947798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 30299008 - 30298968
Alignment:
Q  346 cacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||| |||||||||||||||||||||||||||| ||||    
T  30299008 cacgacaccgacacttgtaattacactgaattatgtcattt 30298968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 30327876 - 30327836
Alignment:
Q  346 cacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||| |||||||||||||||||||||||||||| ||||    
T  30327876 cacgacaccgacacttgtaattacactgaattatgtcattt 30327836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 11596348 - 11596390
Alignment:
Q  344 gacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||| | |||||||||||||||||||||||||| ||||    
T  11596348 gacacgacacctacacttgtaattacactgaattatgtgattt 11596390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 348 - 386
Target Start/End: Original strand, 12797338 - 12797376
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  12797338 cgacaccgacacttgtaattacactgaattatgtgattt 12797376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 386
Target Start/End: Complemental strand, 13134525 - 13134471
Alignment:
Q  332 gtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||||||||  ||||||||||||||||| | |||||||||| |||||||| ||||    
T  13134525 gtgttcgacgtcgacacgacatcgacacatataattacactaaattatgtgattt 13134471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 348 - 386
Target Start/End: Complemental strand, 21945562 - 21945524
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  21945562 cgacaccgacacttgtaattacactgaattatgtcattt 21945524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 348 - 386
Target Start/End: Complemental strand, 42640588 - 42640550
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  42640588 cgacaccgacacttgtaattacactgaattatgtgattt 42640550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 340 - 386
Target Start/End: Complemental strand, 46160963 - 46160917
Alignment:
Q  340 caccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||||||| |||||| | |||| |||||||||||||||||||    
T  46160963 caccgacacgacaccgacacatataataacactgaattatgttattt 46160917  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 386
Target Start/End: Original strand, 12895110 - 12895154
Alignment:
Q  342 ccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||||| ||||||||||||||||  |||||||||| ||||    
T  12895110 ccgacacgacaccgacacttgtaattactttgaattatgtgattt 12895154  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 348 - 380
Target Start/End: Complemental strand, 16073453 - 16073421
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatg 380  Q
    ||||| |||||||||||||||||||||||||||    
T  16073453 cgacaccgacacttgtaattacactgaattatg 16073421  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 19482734 - 19482694
Alignment:
Q  341 accgacacgacatcgacacttgtaattacactgaattatgt 381  Q
    |||||||||||| | |||||||||||||||| |||||||||    
T  19482734 accgacacgacaccaacacttgtaattacaccgaattatgt 19482694  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 386
Target Start/End: Original strand, 22234880 - 22234928
Alignment:
Q  338 gacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||||||||| |||||| |  |||||||||||||||||| ||||    
T  22234880 gacaccgacacgacaccgacacatagaattacactgaattatgtgattt 22234928  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 354 - 386
Target Start/End: Complemental strand, 29205497 - 29205465
Alignment:
Q  354 cgacacttgtaattacactgaattatgttattt 386  Q
    |||||||||||||||||||||||||||| ||||    
T  29205497 cgacacttgtaattacactgaattatgtgattt 29205465  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 386
Target Start/End: Complemental strand, 47264055 - 47264007
Alignment:
Q  338 gacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||||| ||| |||||||||| |||||||||||| ||||||||| ||||    
T  47264055 gacaccaacatgacatcgacatttgtaattacacagaattatgtgattt 47264007  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 50280970 - 50280919
Alignment:
Q  319 cggtatcagacacgtgttcgacaccgacacgacatcgacacttgtaattacac 371  Q
    |||| |||||||||||| |||||| ||||||||| || |||||||||||||||    
T  50280970 cggtgtcagacacgtgtccgacac-gacacgacaccggcacttgtaattacac 50280919  T

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Target: scaffold0136 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 386
Target Start/End: Original strand, 3832 - 3887
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| ||||||| ||||||||  ||||||||||||||||||||||||||| ||||    
T  3832 cgtgtccgacaccaacacgacactgacacttgtaattacactgaattatgtgattt 3887  T

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Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 386
Target Start/End: Complemental strand, 71853 - 71746
Alignment:
Q  284 atgaagcacggacattccttggattagacgtgttgcggtatcagacacgtgtt-----cgacaccgacacgacatcgacacttgtaattacactgaatta 378  Q
    ||||||||| |||| |||| ||||||| |||||  |||| || ||||||||||     ||||||||||||||||  |||||| ||||||||||||||||     
T  71853 atgaagcaccgacactcctcggattagtcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacactgacactagtaattacactgaattg 71754  T
Q  379 tgttattt 386  Q
    ||| ||||    
T  71753 tgtgattt 71746  T

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Target: scaffold0223 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 386
Target Start/End: Complemental strand, 20239 - 20193
Alignment:
Q  340 caccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||||||||||||  ||||||||||||||||||||||||||| ||||    
T  20239 caccgacacgacactgacacttgtaattacactgaattatgtgattt 20193  T

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Target: scaffold0044 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 386
Target Start/End: Complemental strand, 53303 - 53201
Alignment:
Q  289 gcacggacattccttggattagacgtgttgcggtatcagacacgtgtt-----cgacaccgacacgacatcgacacttgtaattacactgaattatgtta 383  Q
    ||||||||| | ||||||||| ||||||  |||| || |||||||||      ||||||||||||| || |||||||| ||||||||||||||||||| |    
T  53303 gcacggacacttcttggattaaacgtgtcccggtgtcggacacgtgtcatgtccgacaccgacacggcaccgacacttataattacactgaattatgtga 53204  T
Q  384 ttt 386  Q
    |||    
T  53203 ttt 53201  T

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Target: scaffold0025 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 23832 - 23791
Alignment:
Q  345 acacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    |||||||| |||||||||||||||||||||||||||| ||||    
T  23832 acacgacaccgacacttgtaattacactgaattatgtgattt 23791  T

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Target: scaffold0171 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 386
Target Start/End: Complemental strand, 23485 - 23441
Alignment:
Q  342 ccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||||||||| |||||||| ||||||||||||||||||| ||||    
T  23485 ccgacacgacaccgacacttataattacactgaattatgtgattt 23441  T

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Target: scaffold0171; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 23587 - 23532
Alignment:
Q  331 cgtgttcgacaccgacacgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| ||||||||| ||||||  ||||||| ||||||||||||||||||| ||||    
T  23587 cgtgtccgacaccgaaacgacactgacacttataattacactgaattatgtgattt 23532  T

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Target: scaffold0008 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 381
Target Start/End: Original strand, 263362 - 263405
Alignment:
Q  338 gacaccgacacgacatcgacacttgtaattacactgaattatgt 381  Q
    |||||||||||||||  ||||||| |||||||||||||||||||    
T  263362 gacaccgacacgacactgacacttataattacactgaattatgt 263405  T

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Target: scaffold0050 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 348 - 386
Target Start/End: Complemental strand, 70337 - 70299
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatgttattt 386  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  70337 cgacaccgacacttataattacactgaattatgttattt 70299  T

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Target: scaffold0083 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 381
Target Start/End: Original strand, 45530 - 45563
Alignment:
Q  348 cgacatcgacacttgtaattacactgaattatgt 381  Q
    ||||| ||||||||||||||||||||||||||||    
T  45530 cgacaccgacacttgtaattacactgaattatgt 45563  T

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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 354 - 386
Target Start/End: Complemental strand, 130535 - 130503
Alignment:
Q  354 cgacacttgtaattacactgaattatgttattt 386  Q
    |||||||||||||||||||||||||||| ||||    
T  130535 cgacacttgtaattacactgaattatgtgattt 130503  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 123686 - 123654
Alignment:
Q  349 gacatcgacacttgtaattacactgaattatgt 381  Q
    |||| ||||||||||||||||||||||||||||    
T  123686 gacaccgacacttgtaattacactgaattatgt 123654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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