View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10706_low_12 (Length: 333)
Name: NF10706_low_12
Description: NF10706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10706_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 37808481 - 37808166
Alignment:
| Q |
1 |
accctgcattaacattcacatacatttaacaacttcaataacaacaattttggtaaacaaaatagttcatgttgagcatttacggcatatgcattgacta |
100 |
Q |
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| T |
37808481 |
accctgcattaacattcacatacatttaacaacttcaataacaacaattttggtaaacaaaatagttcatgttgagcatttacggcatatgcattgacta |
37808382 |
T |
|
| Q |
101 |
acaatgtatatgaattaaattcttaaatttgtacgagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatcc |
200 |
Q |
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| T |
37808381 |
acaatgtatatgaattaaattcttaaatttgtacgagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatcc |
37808282 |
T |
|
| Q |
201 |
ctatcgacacaaagagcaacaacaatggcttgaactgctcccattgagcacatcaatgctgagcatgaatgatggcatggatattcttcattcaacttag |
300 |
Q |
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| T |
37808281 |
ctatcgacacaaagagcaacaacaatggcttgaactgctcccattgagcacatcaatgctgagcatgaatgatggaatggatattcttcattcaacttag |
37808182 |
T |
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| Q |
301 |
cctgtaaagctcaaac |
316 |
Q |
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| T |
37808181 |
cctgtaaacctcaaac |
37808166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 132 - 304
Target Start/End: Complemental strand, 37782973 - 37782801
Alignment:
| Q |
132 |
tacgagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaacaacaatggctt |
231 |
Q |
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| T |
37782973 |
tacgagcataccgaataagcaatagtaagaagtctgatatcgtaaccgagcttccattgattccaatctctatcgatacaaagagcaaaaacaatggctt |
37782874 |
T |
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| Q |
232 |
gaactgctcccattgagcacatcaatgctgagcatgaatgatggcatggatattcttcattcaacttagcctg |
304 |
Q |
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| T |
37782873 |
gaatcgctgccattgtgcacaccaatgctgagcatgaattgtgttctggaaattcttcattcaacttagcctg |
37782801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 124 - 294
Target Start/End: Complemental strand, 37792331 - 37792161
Alignment:
| Q |
124 |
taaatttgtacgagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaacaac |
223 |
Q |
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|||| ||||| ||||||||||||||||| | ||||||| ||||||| |||||| |||||||||| |||| |||| || || ||||||| ||||| ||| |
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| T |
37792331 |
taaagttgtatgagcataccgaataagctaccatgagaagtctgatattgtaaccaagcttccattgggtcaaatctctgtccacacaaatagcaaaaac |
37792232 |
T |
|
| Q |
224 |
aatggcttgaactgctcccattgagcacatcaatgctgagcatgaatgatggcatggatattcttcattca |
294 |
Q |
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| T |
37792231 |
gatggcttgaattgctcccattgtcgacatcaaagcagtgcttgagtgatggcttggatattctttattca |
37792161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 135 - 303
Target Start/End: Complemental strand, 37802012 - 37801844
Alignment:
| Q |
135 |
gagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaacaacaatggcttgaa |
234 |
Q |
| |
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||||||||||||||||| | ||||||| ||||||| |||||| |||||||||| |||| |||| || || ||||||| ||||| ||| |||||||||| |
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| T |
37802012 |
gagcataccgaataagctaccatgagaagtctgatattgtaaccaagcttccattgggtcaaatctctgtccacacaaatagcaaaaacgatggcttgaa |
37801913 |
T |
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| Q |
235 |
ctgctcccattgagcacatcaatgctgagcatgaatgatggcatggatattcttcattcaacttagcct |
303 |
Q |
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| T |
37801912 |
ttgctcccattgtcgacatcaaagcagtgcttgagtgatggcttggatattctttattcattttagcct |
37801844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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