View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10706_low_14 (Length: 274)

Name: NF10706_low_14
Description: NF10706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10706_low_14
NF10706_low_14
[»] chr7 (12 HSPs)
chr7 (87-195)||(14735357-14735465)
chr7 (87-201)||(14736110-14736224)
chr7 (128-189)||(39045219-39045280)
chr7 (133-189)||(30414187-30414243)
chr7 (133-189)||(25137418-25137474)
chr7 (133-189)||(25137911-25137967)
chr7 (128-188)||(39044348-39044408)
chr7 (128-171)||(41224823-41224866)
chr7 (120-169)||(29006374-29006423)
chr7 (120-169)||(29007171-29007220)
chr7 (139-195)||(33140285-33140342)
chr7 (140-195)||(42607081-42607137)
[»] chr5 (17 HSPs)
chr5 (62-201)||(17590559-17590698)
chr5 (87-195)||(36912246-36912351)
chr5 (87-188)||(36912932-36913033)
chr5 (87-195)||(17591324-17591431)
chr5 (129-195)||(35107586-35107652)
chr5 (128-189)||(8320881-8320942)
chr5 (90-143)||(39086797-39086850)
chr5 (133-189)||(3595783-3595839)
chr5 (133-189)||(3596279-3596335)
chr5 (133-189)||(7858333-7858389)
chr5 (133-189)||(8321373-8321429)
chr5 (133-189)||(12330154-12330210)
chr5 (133-189)||(12330648-12330704)
chr5 (133-189)||(31078462-31078518)
chr5 (139-195)||(4790209-4790265)
chr5 (149-189)||(25993570-25993610)
chr5 (133-189)||(29759603-29759659)
[»] chr4 (16 HSPs)
chr4 (87-195)||(19129525-19129633)
chr4 (128-198)||(19130382-19130452)
chr4 (128-195)||(3167458-3167525)
chr4 (122-195)||(14472485-14472559)
chr4 (90-197)||(231992-232099)
chr4 (128-181)||(32291336-32291389)
chr4 (139-195)||(25655629-25655687)
chr4 (128-189)||(39413602-39413663)
chr4 (133-189)||(5235380-5235436)
chr4 (133-189)||(6934488-6934544)
chr4 (133-189)||(20174976-20175032)
chr4 (128-196)||(32292196-32292264)
chr4 (90-166)||(47377541-47377616)
chr4 (139-196)||(46764251-46764310)
chr4 (120-195)||(34154794-34154869)
chr4 (133-189)||(39412771-39412827)
[»] chr3 (20 HSPs)
chr3 (196-261)||(52671233-52671298)
chr3 (90-167)||(32355893-32355969)
chr3 (133-189)||(36992159-36992215)
chr3 (133-189)||(37017599-37017655)
chr3 (126-195)||(8327163-8327231)
chr3 (108-169)||(37105038-37105098)
chr3 (133-189)||(5113204-5113260)
chr3 (133-189)||(20586078-20586134)
chr3 (133-189)||(20586570-20586626)
chr3 (133-189)||(24394253-24394309)
chr3 (133-189)||(26006152-26006208)
chr3 (133-188)||(45000813-45000868)
chr3 (97-139)||(25329908-25329950)
chr3 (141-195)||(44021286-44021340)
chr3 (107-195)||(45297549-45297637)
chr3 (133-189)||(5113694-5113750)
chr3 (133-189)||(24394720-24394776)
chr3 (99-139)||(42179154-42179194)
chr3 (99-139)||(43638030-43638070)
chr3 (133-189)||(45000321-45000377)
[»] scaffold1052 (1 HSPs)
scaffold1052 (92-167)||(359-433)
[»] chr2 (12 HSPs)
chr2 (94-167)||(6182121-6182193)
chr2 (16-59)||(14360438-14360481)
chr2 (128-189)||(6610024-6610085)
chr2 (128-189)||(15562021-15562082)
chr2 (133-189)||(7994061-7994117)
chr2 (133-189)||(15561547-15561603)
chr2 (133-189)||(16903883-16903939)
chr2 (133-189)||(30899396-30899452)
chr2 (139-195)||(34617653-34617710)
chr2 (133-189)||(6609557-6609613)
chr2 (133-189)||(7994559-7994615)
chr2 (133-189)||(37996569-37996625)
[»] chr6 (8 HSPs)
chr6 (133-189)||(7635621-7635677)
chr6 (133-189)||(7635130-7635186)
chr6 (133-189)||(18290481-18290537)
chr6 (90-166)||(24126002-24126077)
chr6 (140-195)||(25067842-25067898)
chr6 (150-195)||(930923-930969)
chr6 (133-189)||(18290221-18290277)
chr6 (133-189)||(18605845-18605901)
[»] chr1 (9 HSPs)
chr1 (107-195)||(17151002-17151090)
chr1 (133-189)||(38468912-38468968)
chr1 (133-189)||(43755855-43755911)
chr1 (133-189)||(43756333-43756389)
chr1 (147-189)||(38328886-38328928)
chr1 (133-182)||(32537658-32537707)
chr1 (139-197)||(28371694-28371753)
chr1 (133-189)||(32538488-32538544)
chr1 (133-189)||(38469271-38469327)
[»] chr8 (2 HSPs)
chr8 (99-144)||(41707370-41707415)
chr8 (133-189)||(30846022-30846078)
[»] scaffold0508 (1 HSPs)
scaffold0508 (133-189)||(4139-4195)
[»] scaffold0155 (1 HSPs)
scaffold0155 (129-169)||(17366-17406)
[»] scaffold0129 (1 HSPs)
scaffold0129 (117-188)||(42493-42565)
[»] scaffold0006 (1 HSPs)
scaffold0006 (133-189)||(202269-202325)


Alignment Details
Target: chr7 (Bit Score: 89; Significance: 6e-43; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 14735465 - 14735357
Alignment:
Q  87 tcaagtgtgaagagactatcataagatcaatgttcctcttaaatcaaatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatacta 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| |||    
T  14735465 tcaagtgtgaagagactatcataagatcaatgttcctcttaaatcaaatgattcaaaaacaatttttccatggtgggaaaaaatagtctttcccatgcta 14735366  T
Q  187 aaccccacc 195  Q
    ||| |||||    
T  14735365 aactccacc 14735357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 87 - 201
Target Start/End: Original strand, 14736110 - 14736224
Alignment:
Q  87 tcaagtgtgaagagactatcataagatcaatgttcctcttaaatcaaatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatacta 186  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||  ||    
T  14736110 tcaagtgtgaagagattatcataagatcaatgttcctcttaaatcaaatggttcaaaaacatctttcccatggtaggaaaaaatagcctttcccatgtta 14736209  T
Q  187 aaccccaccaataat 201  Q
    ||||||||| |||||    
T  14736210 aaccccacccataat 14736224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 39045219 - 39045280
Alignment:
Q  128 aatcaaatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| |||| |||||||||||| ||||||||||||||| ||| ||||||||| ||||||    
T  39045219 aatcaaagggttgaaaaacaacttttccatggtgggaaaaagtagcctttcccatgctaaac 39045280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 30414243 - 30414187
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||||||||| ||| ||||||||||||||||    
T  30414243 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatactaaac 30414187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 25137474 - 25137418
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||||||||| ||| ||||||||| ||||||    
T  25137474 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaaac 25137418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 25137911 - 25137967
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  || ||||||||||||||||||| ||||||||||||| ||||||    
T  25137911 aatggttaaaaactaattttcccatggtgggaaaaattagtctttcccatgctaaac 25137967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 39044408 - 39044348
Alignment:
Q  128 aatcaaatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaa 188  Q
    ||||||| |||| |||||||| ||||||||||||||||||| ||  |||||||| ||||||    
T  39044408 aatcaaagggttgaaaaacaattttcccatggtgggaaaaagtaacctttcccagactaaa 39044348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 41224823 - 41224866
Alignment:
Q  128 aatcaaatggttcaaaaacaactttcccatggtgggaaaaaata 171  Q
    |||||||||||| ||||  |||||||||||||||||||||||||    
T  41224823 aatcaaatggttaaaaactaactttcccatggtgggaaaaaata 41224866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 29006423 - 29006374
Alignment:
Q  120 tcctcttaaatcaaatggttcaaaaacaactttcccatggtgggaaaaaa 169  Q
    ||||||| |||| ||||||| ||||  |||||||||||||||||||||||    
T  29006423 tcctctttaatctaatggttaaaaactaactttcccatggtgggaaaaaa 29006374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 29007171 - 29007220
Alignment:
Q  120 tcctcttaaatcaaatggttcaaaaacaactttcccatggtgggaaaaaa 169  Q
    ||||||| |||| ||||||| ||||  |||||||||||||||||||||||    
T  29007171 tcctctttaatctaatggttaaaaactaactttcccatggtgggaaaaaa 29007220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 33140285 - 33140342
Alignment:
Q  139 tcaaaaac-aactttcccatggtgggaaaaaatagtctttcccatactaaaccccacc 195  Q
    |||||||| |||||||||||||||||||||||    ||||||||||||||||| ||||    
T  33140285 tcaaaaactaactttcccatggtgggaaaaaagtaactttcccatactaaacctcacc 33140342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 195
Target Start/End: Complemental strand, 42607137 - 42607081
Alignment:
Q  140 caaaaacaactttcccatggtgggaaa-aaatagtctttcccatactaaaccccacc 195  Q
    ||||||||||||||||||||||||||| || |   ||||||||| ||||||||||||    
T  42607137 caaaaacaactttcccatggtgggaaacaattcccctttcccatgctaaaccccacc 42607081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 9e-42; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 62 - 201
Target Start/End: Complemental strand, 17590698 - 17590559
Alignment:
Q  62 gaaagggaaagagtgaagnnnnnnntcaagtgtgaagagactatcataagatcaatgttcctcttaaatcaaatggttcaaaaacaactttcccatggtg 161  Q
    ||||||||||||||||||       ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  17590698 gaaagggaaagagtgaagaaaaaaatcaagtgtgaagagattatcataagatcaatgttcctcttaaatcaaatggttcaaaaacatctttcccatggta 17590599  T
Q  162 ggaaaaaatagtctttcccatactaaaccccaccaataat 201  Q
    ||||||||||||||||| |||  |||||||| || |||||    
T  17590598 ggaaaaaatagtctttctcatgttaaaccccgcccataat 17590559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 36912351 - 36912246
Alignment:
Q  87 tcaagtgtgaagagactatcataagatcaatgttcctcttaaatcaaatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatacta 186  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  36912351 tcaagtgtgaagagactatcataagatcaatgttc---ttaaatcaaatggttcaaaaacaactttcccatggtgggaaaaaatagcctttcccatgcta 36912255  T
Q  187 aaccccacc 195  Q
    |||||||||    
T  36912254 aaccccacc 36912246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 87 - 188
Target Start/End: Original strand, 36912932 - 36913033
Alignment:
Q  87 tcaagtgtgaagagactatcataagatcaatgttcctcttaaatcaaatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatacta 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||  ||||||||||||    
T  36912932 tcaagtgtgaagagactatcataagatcaatgttcctcttaaatcaaatggttcaaaaacaacttttccatggtgagaaaaaatagcatttcccatacta 36913031  T
Q  187 aa 188  Q
    ||    
T  36913032 aa 36913033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 87 - 195
Target Start/End: Original strand, 17591324 - 17591431
Alignment:
Q  87 tcaagtgtgaagagactatcataagatcaatgttcctcttaaatcaaatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatacta 186  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  17591324 tcaagtttgaagagactattataagatcaatgttcctcttaaatcaaatggttcaaaaacaactttcccatggt-ggaaaaaatagtctttcccatgcta 17591422  T
Q  187 aaccccacc 195  Q
    || ||||||    
T  17591423 aatcccacc 17591431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 35107586 - 35107652
Alignment:
Q  129 atcaaatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaaccccacc 195  Q
    |||||||||||||||||||||||| | |||||||||||||||||  ||||  || ||||||||||||    
T  35107586 atcaaatggttcaaaaacaacttttctatggtgggaaaaaatagcatttcttatgctaaaccccacc 35107652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 8320942 - 8320881
Alignment:
Q  128 aatcaaatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    |||| ||||||| ||||  |||||||||||||||||||||| ||| ||||||||| ||||||    
T  8320942 aatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaaac 8320881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 39086850 - 39086797
Alignment:
Q  90 agtgtgaagagactatcataagatcaatgttcctcttaaatcaaatggttcaaa 143  Q
    ||||||||||| |||| |||||||||||||| |||||  |||||||||||||||    
T  39086850 agtgtgaagagtctatgataagatcaatgtttctcttttatcaaatggttcaaa 39086797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 3595839 - 3595783
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||||||||| ||| ||||||||| ||||||    
T  3595839 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaaac 3595783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 3596279 - 3596335
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  || ||||||||||||||||||| ||||||||||||| ||||||    
T  3596279 aatggttaaaaactaattttcccatggtgggaaaaattagtctttcccatgctaaac 3596335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 7858389 - 7858333
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||||||||| ||| ||||||||| ||||||    
T  7858389 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaaac 7858333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 8321373 - 8321429
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||||||||| ||| ||||||||| ||||||    
T  8321373 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaaac 8321429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 12330210 - 12330154
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||||||||| ||| ||||||||| ||||||    
T  12330210 aatggttaaaaattaactttcccatggtgggaaaaattagcctttcccatgctaaac 12330154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 12330648 - 12330704
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||||||||| ||| ||||||||| ||||||    
T  12330648 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaaac 12330704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 31078518 - 31078462
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||| ||||| ||||||||||||| ||||||    
T  31078518 aatggttaaaaactaactttcccatggtggaaaaaattagtctttcccatgctaaac 31078462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 4790209 - 4790265
Alignment:
Q  139 tcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaaccccacc 195  Q
    ||||||| |||||||||||| ||||||| ||   |||||||||| ||||||||||||    
T  4790209 tcaaaaataactttcccatgatgggaaacaaccctctttcccatcctaaaccccacc 4790265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 25993570 - 25993610
Alignment:
Q  149 ctttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    |||||||||||||||||||| ||| |||||||| |||||||    
T  25993570 ctttcccatggtgggaaaaactagcctttcccagactaaac 25993610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 29759659 - 29759603
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  ||||||||||| |||| ||||| ||||||||||||| ||||||    
T  29759659 aatggttaaaaactaactttcccatagtggaaaaaattagtctttcccatgctaaac 29759603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 19129633 - 19129525
Alignment:
Q  87 tcaagtgtgaagagactatcataagatcaatgttcctcttaaatcaaatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatacta 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||  ||| |||    
T  19129633 tcaagtgtgaagagactatcataagatcaatgttcctcttaaatcaaatggttcaaaaacaactttcccatggtgggagaaaatagcctttttcatgcta 19129534  T
Q  187 aaccccacc 195  Q
    ||| |||||    
T  19129533 aactccacc 19129525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 19130382 - 19130452
Alignment:
Q  128 aatcaaatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaaccccaccaat 198  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  19130382 aatcaaatggtccaaaaacaattttcccatgatgggaaaaaatagtctttcccatgctaaaccccaccaat 19130452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 3167458 - 3167525
Alignment:
Q  128 aatcaaatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaaccccacc 195  Q
    |||||||||||| |||||||||||||||||||||||||||| || |||||||||| ||||||||||||    
T  3167458 aatcaaatggttaaaaaacaactttcccatggtgggaaaaagtaatctttcccatgctaaaccccacc 3167525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 14472559 - 14472485
Alignment:
Q  122 ctcttaaatcaaatggttcaaaaacaactttcccatggtgggaaaaaa--tagtctttcccatactaaaccccacc 195  Q
    ||||| |||||||||||| |||||||||||| ||||||||||||||||  |||||||||||| |||||||||||||    
T  14472559 ctctttaatcaaatggtt-aaaaacaacttttccatggtgggaaaaaaaatagtctttcccagactaaaccccacc 14472485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 197
Target Start/End: Original strand, 231992 - 232099
Alignment:
Q  90 agtgtgaagagactatcataagatcaatgttcctcttaaatcaaatggttcaaaaacaactttcccatggtgggaaa-aaatagtctttcccatactaaa 188  Q
    |||||| ||||||||| |||||||||||||||||| |  ||| ||||||| ||||   ||||||||||||||||||| || |   |||||||||||||||    
T  231992 agtgtggagagactatgataagatcaatgttcctcatttatctaatggtt-aaaatttactttcccatggtgggaaacaacttccctttcccatactaaa 232090  T
Q  189 ccccaccaa 197  Q
    |||||||||    
T  232091 ccccaccaa 232099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 32291389 - 32291336
Alignment:
Q  128 aatcaaatggttcaaaaacaactttcccatggtgggaaaaaatagtctttccca 181  Q
    ||||||| |||| ||||||||||||||||| |||||||||||||| ||||||||    
T  32291389 aatcaaagggttgaaaaacaactttcccatagtgggaaaaaatagcctttccca 32291336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 25655629 - 25655687
Alignment:
Q  139 tcaaaaac-aactttcccatggtgggaaaaaa-tagtctttcccatactaaaccccacc 195  Q
    |||||||| ||||||||||||||||||||||| |||||||||||| | |||||||||||    
T  25655629 tcaaaaactaactttcccatggtgggaaaaaactagtctttcccaaattaaaccccacc 25655687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 39413602 - 39413663
Alignment:
Q  128 aatcaaatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    |||| ||||||| ||||  |||||||| ||||||||||||| ||||||||||||| ||||||    
T  39413602 aatccaatggttaaaaactaactttcctatggtgggaaaaattagtctttcccattctaaac 39413663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 5235436 - 5235380
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||||||||| ||| ||||||||| ||||||    
T  5235436 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaaac 5235380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 6934488 - 6934544
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||| ||||| ||||||||||||| ||||||    
T  6934488 aatggttaaaaactaactttcccatggtggaaaaaattagtctttcccatgctaaac 6934544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 20175032 - 20174976
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||||||||| ||| ||||||||| ||||||    
T  20175032 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaaac 20174976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 32292196 - 32292264
Alignment:
Q  128 aatcaaatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaaccccacca 196  Q
    ||||||| |||| ||||| ||||||| |||||||||||||| |||  ||||||| ||||||| ||||||    
T  32292196 aatcaaagggttgaaaaataactttctcatggtgggaaaaagtagcatttcccagactaaacgccacca 32292264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 166
Target Start/End: Original strand, 47377541 - 47377616
Alignment:
Q  90 agtgtgaagagactatcataagatcaatgttcctcttaaatcaaatggttcaaaaacaactttcccatggtgggaaa 166  Q
    |||||| | ||||||| |||| || ||||||||||||||||| ||||| |  |||| ||||||||||||||||||||    
T  47377541 agtgtggatagactataataaaattaatgttcctcttaaatctaatggct-gaaaataactttcccatggtgggaaa 47377616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 46764310 - 46764251
Alignment:
Q  139 tcaaaaac-aactttcccatggtgggaaaaaa-tagtctttcccatactaaaccccacca 196  Q
    |||||||| ||||||||||||||||||||||| |||||||| ||| | ||||||||||||    
T  46764310 tcaaaaactaactttcccatggtgggaaaaaactagtcttttccaaattaaaccccacca 46764251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 34154869 - 34154794
Alignment:
Q  120 tcctcttaaatcaaatggttcaaaaacaactttcccatggtgggaaaaaatagtc-tttcccatactaaaccccacc 195  Q
    ||||||| |||||||||||| ||||| | |||||||||||||||||| ||   || |||||||| ||||||||||||    
T  34154869 tcctctttaatcaaatggttgaaaaata-ctttcccatggtgggaaacaagtttcttttcccatgctaaaccccacc 34154794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 39412827 - 39412771
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||| ||||||||| ||| ||||||||| ||||||    
T  39412827 aatggttaaaaactaactttcccatgatgggaaaaattagcctttcccatgctaaac 39412771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 196 - 261
Target Start/End: Original strand, 52671233 - 52671298
Alignment:
Q  196 aataatatgatcatcttcataaacgattagatataaaatatatacatttttgcccaccgcatgtct 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52671233 aataatatgatcatcttcataaacgattagatataaaatatatacatttttgcccaccgcatgtct 52671298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 167
Target Start/End: Complemental strand, 32355969 - 32355893
Alignment:
Q  90 agtgtgaagagactatcataagatcaatgttcctcttaaatcaaatggttcaaaaacaactttcccatggtgggaaaa 167  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||| |||||| | ||||||| ||||||| ||||    
T  32355969 agtgtgaagagactatcataagatcaatgttcatcttaaatctaatgg-tcaaaacctactttcctatggtggaaaaa 32355893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 36992159 - 36992215
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||||||||| ||| ||||||||||||||||    
T  36992159 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatactaaac 36992215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 37017599 - 37017655
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||||||||| ||| ||||||||||||||||    
T  37017599 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatactaaac 37017655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 8327163 - 8327231
Alignment:
Q  126 taaatcaaatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaaccccacc 195  Q
    |||||| |||||| || ||| |||||||||||||||| ||||| ||||||||||||| |||||| |||||    
T  8327163 taaatctaatggt-cagaaaaaactttcccatggtggaaaaaattagtctttcccatgctaaactccacc 8327231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 37105038 - 37105098
Alignment:
Q  108 taagatcaatgttcctcttaaatcaaatggttcaaaaacaactttcccatggtgggaaaaaa 169  Q
    |||||||||||||||  || |||| ||||||| ||||| |||||||||||||||||||||||    
T  37105038 taagatcaatgttcccttttaatctaatggtttaaaaa-aactttcccatggtgggaaaaaa 37105098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 5113260 - 5113204
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||||||||| ||| ||||||||| ||||||    
T  5113260 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaaac 5113204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 20586134 - 20586078
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||||||||| ||| ||||||||| ||||||    
T  20586134 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaaac 20586078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 20586570 - 20586626
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||||||||| ||| ||||||||| ||||||    
T  20586570 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaaac 20586626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 24394309 - 24394253
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||| ||||||| ||||| ||||||||||||||||||||    
T  24394309 aatggttaaaaactaactttcctatggtggaaaaaattagtctttcccatactaaac 24394253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 26006208 - 26006152
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||||||||| ||| ||||||||| ||||||    
T  26006208 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaaac 26006152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 45000813 - 45000868
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaa 188  Q
    ||||||| ||||  |||||||||||||||||||||| ||| ||||||||| |||||    
T  45000813 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccattctaaa 45000868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 25329908 - 25329950
Alignment:
Q  97 agagactatcataagatcaatgttcctcttaaatcaaatggtt 139  Q
    ||||||||| |||| |||||||||||||||||||| |||||||    
T  25329908 agagactatgataaaatcaatgttcctcttaaatctaatggtt 25329950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 44021340 - 44021286
Alignment:
Q  141 aaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaaccccacc 195  Q
    ||||| |||||||||||||||||||| ||   |||||||||| ||||||||||||    
T  44021340 aaaaaaaactttcccatggtgggaaacaactttctttcccatgctaaaccccacc 44021286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 45297637 - 45297549
Alignment:
Q  107 ataagatcaatgttcctcttaaatcaaatggttcaaaaacaactttcccatggtgggaaa-aaatagtctttcccatactaaaccccacc 195  Q
    |||||||||||||||||  |  ||| ||||||| ||||| |||||||||||| ||||||| || |   ||||||||||||||||||||||    
T  45297637 ataagatcaatgttccttgttgatctaatggttaaaaaa-aactttcccatgatgggaaacaactctcctttcccatactaaaccccacc 45297549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 5113694 - 5113750
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||||||| | ||| ||||||||| ||||||    
T  5113694 aatggttaaaaactaactttcccatggtgggaaagattaggctttcccatgctaaac 5113750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 24394720 - 24394776
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||||||||| |||  |||||||| ||||||    
T  24394720 aatggttaaaaactaactttcccatggtgggaaaaattagcatttcccatgctaaac 24394776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 42179194 - 42179154
Alignment:
Q  99 agactatcataagatcaatgttcctcttaaatcaaatggtt 139  Q
    ||||||| |||| |||||||||||||||||||| |||||||    
T  42179194 agactatgataaaatcaatgttcctcttaaatctaatggtt 42179154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 43638030 - 43638070
Alignment:
Q  99 agactatcataagatcaatgttcctcttaaatcaaatggtt 139  Q
    ||||||| |||| |||||||||||||||||||| |||||||    
T  43638030 agactatgataaaatcaatgttcctcttaaatctaatggtt 43638070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 45000377 - 45000321
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  ||||||||||| |||||||||| ||| ||||||||| ||||||    
T  45000377 aatggttaaaaactaactttcccatagtgggaaaaattagcctttcccatgctaaac 45000321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1052 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1052
Description:

Target: scaffold1052; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 433 - 359
Alignment:
Q  92 tgtgaagagactatcataagatcaatgttcctcttaaatcaaatggttcaaaaacaactttcccatggtgggaaaa 167  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||| |||||| | ||||||| ||||||||||||    
T  433 tgtgaagagactatcataagatcaatgttcatcttaaatctaatgg-tcaaaacctactttcctatggtgggaaaa 359  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 6182193 - 6182121
Alignment:
Q  94 tgaagagactatcataagatcaatgttcctcttaaatcaaatggttcaaaaacaactttcccatggtgggaaaa 167  Q
    |||||||||||||||||||||||||||| ||||||||| ||||| |||||| | ||||||| ||||||| ||||    
T  6182193 tgaagagactatcataagatcaatgttcatcttaaatctaatgg-tcaaaatctactttcctatggtggaaaaa 6182121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 14360481 - 14360438
Alignment:
Q  16 tcacttgggttgtgagtattgtgttaaatctggacaccatagtt 59  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  14360481 tcacttgggttgtgagtattgtgttaaatctggacatcatagtt 14360438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 6610024 - 6610085
Alignment:
Q  128 aatcaaatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    |||| ||||||| ||||  |||||||||||||||||||||| ||| ||||||||| ||||||    
T  6610024 aatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaaac 6610085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 15562021 - 15562082
Alignment:
Q  128 aatcaaatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    |||| ||||||| ||||  |||||||||||||||||||||| ||| ||||||||| ||||||    
T  15562021 aatctaatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaaac 15562082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 7994117 - 7994061
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||| ||||||||| ||| ||||||||||||||||    
T  7994117 aatggttaaaaactaactttcccatgatgggaaaaattagcctttcccatactaaac 7994061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 15561603 - 15561547
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||| ||||||||||||| ||||||||||||| ||||||    
T  15561603 aatggttaaaaactaactttccaatggtgggaaaaattagtctttcccatgctaaac 15561547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 16903883 - 16903939
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||||||||| ||| ||||||||| ||||||    
T  16903883 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaaac 16903939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 30899452 - 30899396
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||||||||| ||| ||||||||| ||||||    
T  30899452 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaaac 30899396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 34617710 - 34617653
Alignment:
Q  139 tcaaaaacaactttcccatggtgggaaa-aaatagtctttcccatactaaaccccacc 195  Q
    ||||||| |||||||||||||||||||| || ||  ||||||||| ||||||||||||    
T  34617710 tcaaaaataactttcccatggtgggaaacaattatcctttcccatgctaaaccccacc 34617653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 6609613 - 6609557
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||| ||||||||||||||| ||| ||||||||| ||||||    
T  6609613 aatggttaaaaactaacttttccatggtgggaaaaattagcctttcccatgctaaac 6609557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 7994559 - 7994615
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||| ||||| ||| ||||||||| ||||||    
T  7994559 aatggttaaaaactaactttcccatggtggaaaaaattagcctttcccatgctaaac 7994615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 37996569 - 37996625
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||| ||||||||| ||| ||||||||| ||||||    
T  37996569 aatggttaaaaactaactttcccatgatgggaaaaattagcctttcccatgctaaac 37996625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 7635621 - 7635677
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||||||||| ||||||||||||| ||||||    
T  7635621 aatggttaaaaactaactttcccatggtgggaaaaattagtctttcccatgctaaac 7635677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 7635186 - 7635130
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||||||||| ||| ||||||||| ||||||    
T  7635186 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaaac 7635130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 18290481 - 18290537
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||||||||| ||| ||||||||| ||||||    
T  18290481 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaaac 18290537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 24126077 - 24126002
Alignment:
Q  90 agtgtgaagagactatcataagatcaatgttcctcttaaatcaaatggttcaaaaacaactttcccatggtgggaaa 166  Q
    |||||| | ||||||| |||| || ||||||||||||||||| ||||| |  |||| ||||||||||||||||||||    
T  24126077 agtgtggatagactataataaaattaatgttcctcttaaatctaatggct-gaaaataactttcccatggtgggaaa 24126002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 25067842 - 25067898
Alignment:
Q  140 caaaaacaactttcccatggtgggaaa-aaatagtctttcccatactaaaccccacc 195  Q
    ||||||||||||||| ||||||||||| |||||  ||||||||| ||||||||||||    
T  25067842 caaaaacaactttcctatggtgggaaacaaatatcctttcccatgctaaaccccacc 25067898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 930969 - 930923
Alignment:
Q  150 tttcccatggtgggaaaaaa-tagtctttcccatactaaaccccacc 195  Q
    |||||||||||||||||||| |||||||||||| | |||||||||||    
T  930969 tttcccatggtgggaaaaaactagtctttcccaaattaaaccccacc 930923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 18290277 - 18290221
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||||||||| |||  |||||||| ||||||    
T  18290277 aatggttaaaaattaactttcccatggtgggaaaaattagcttttcccatgctaaac 18290221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 18605845 - 18605901
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||| ||||| ||| ||||||||| ||||||    
T  18605845 aatggttaaaaacaaactttcccatggtggaaaaaattagcctttcccatgctaaac 18605901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 17151090 - 17151002
Alignment:
Q  107 ataagatcaatgttcctcttaaatcaaatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaaccccacc 195  Q
    ||||||||| ||| |||||| |||| | ||||  ||||| ||||||||||||||||||||||  || ||||||||| ||||||| ||||    
T  17151090 ataagatcagtgtacctctttaatctagtggtcaaaaaataactttcccatggtgggaaaaaccagcctttcccatgctaaacctcacc 17151002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 38468968 - 38468912
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||||||||| ||| ||||||||| ||||||    
T  38468968 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaaac 38468912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 43755911 - 43755855
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||||||||| ||| ||||||||| ||||||    
T  43755911 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaaac 43755855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 43756333 - 43756389
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||| ||||| ||||||||||||| ||||||    
T  43756333 aatggttaaaaactaactttcccatggtggaaaaaattagtctttcccatgctaaac 43756389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 189
Target Start/End: Original strand, 38328886 - 38328928
Alignment:
Q  147 aactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    |||||||||||| ||||||||| ||||||||||||| ||||||    
T  38328886 aactttcccatgatgggaaaaattagtctttcccatgctaaac 38328928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 32537707 - 32537658
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccat 182  Q
    ||||||| ||||  |||||||||||||||||||||| ||| |||||||||    
T  32537707 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccat 32537658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 28371694 - 28371753
Alignment:
Q  139 tcaaaaac-aactttcccatggtgggaaaaaa-tagtctttcccatactaaaccccaccaa 197  Q
    |||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||| ||||||    
T  28371694 tcaaaaactaactttcccatggtgggaaaaaagtag-ctttcccatgctaaacctcaccaa 28371753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 32538488 - 32538544
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||| ||||||||||||||| ||| ||||||||| ||||||    
T  32538488 aatggttaaaaactaacttttccatggtgggaaaaattagcctttcccatgctaaac 32538544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 38469271 - 38469327
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||| ||||| ||| ||||||||| ||||||    
T  38469271 aatggttaaaaactaactttcccatggtggaaaaaattagcctttcccatgctaaac 38469327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 41707370 - 41707415
Alignment:
Q  99 agactatcataagatcaatgttcctcttaaatcaaatggttcaaaa 144  Q
    ||||||| ||||||| ||||||||||||||||||||||||| ||||    
T  41707370 agactattataagattaatgttcctcttaaatcaaatggttaaaaa 41707415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 30846078 - 30846022
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||| ||||||||||||| ||||||||||||| ||||||    
T  30846078 aatggttaaaaactaactttcctatggtgggaaaaattagtctttcccatgctaaac 30846022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 4195 - 4139
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||||||||||||||||||| ||| ||||||||| ||||||    
T  4195 aatggttaaaaactaactttcccatggtgggaaaaattagcctttcccatgctaaac 4139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 17406 - 17366
Alignment:
Q  129 atcaaatggttcaaaaacaactttcccatggtgggaaaaaa 169  Q
    ||||||||||| ||||  |||||||||||||||||||||||    
T  17406 atcaaatggttaaaaactaactttcccatggtgggaaaaaa 17366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 42565 - 42493
Alignment:
Q  117 tgttcctcttaaatcaaatggttcaaaaacaactttcccatggtgggaaaaaa-tagtctttcccatactaaa 188  Q
    ||||||| || |||| ||||||| |||  ||||||||||||||||| |||||| ||| ||||||||| |||||    
T  42565 tgttcctatttaatctaatggtttaaacccaactttcccatggtggaaaaaaactagcctttcccatgctaaa 42493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 202269 - 202325
Alignment:
Q  133 aatggttcaaaaacaactttcccatggtgggaaaaaatagtctttcccatactaaac 189  Q
    ||||||| ||||  |||||| ||||||||||||||| ||| |||||| |||||||||    
T  202269 aatggttaaaaactaacttttccatggtgggaaaaattagcctttcctatactaaac 202325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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