View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10706_low_15 (Length: 259)
Name: NF10706_low_15
Description: NF10706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10706_low_15 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 43435388 - 43435159
Alignment:
| Q |
17 |
ttcataaccctaatcatgaaattatccgaaagctgaattttaaccttctccagttcattctcaaccatatcatcccaatcagaccttgaaataatgccaa |
116 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
43435388 |
ttcataaccctaatcacgaaattatccgaaagctgaattttaaccttctccagttcattctcaaccttatcatcccaatcagaccctgaaataatgccaa |
43435289 |
T |
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| Q |
117 |
ccacctttttgacaacattccgcattgcattttgctcaagcatccctttataacaatatggaagcacaacaacatcactccacaactcctccctttttaa |
216 |
Q |
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| T |
43435288 |
ccacctttttaacaacattctgcattgcattttgctcaagcatccctttatagaaatgtgaaagtgcaacaatatcactcttcaaattctcccttttcaa |
43435189 |
T |
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| Q |
217 |
actcgtcgaaatcgtcaaatgtgtctcttc |
246 |
Q |
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|| ||| ||||||||||||| |||||||| |
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| T |
43435188 |
acccgtagaaatcgtcaaatacgtctcttc |
43435159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 43426883 - 43426732
Alignment:
| Q |
17 |
ttcataaccctaatcatgaaattatccgaaagctgaattttaaccttctccagttcattctcaaccatatcatcccaatcagaccttgaaataatgccaa |
116 |
Q |
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|||||||||||||||| |||||| |||||||| ||||||||||||||||| ||||||||||||| | || ||||||||||||| ||||||||| |||| |
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| T |
43426883 |
ttcataaccctaatcacgaaattgtccgaaagttgaattttaaccttctcgagttcattctcaatctcattgtcccaatcagaccctgaaataataccaa |
43426784 |
T |
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| Q |
117 |
ccacctttttgacaacattccgcattgcattttgctcaagcatccctttata |
168 |
Q |
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| T |
43426783 |
ccacctttttgacaacactctgcattgcatcctgctcaagcatccctttata |
43426732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 20868 - 20642
Alignment:
| Q |
17 |
ttcataaccctaatcatgaaattatccgaaagctgaattttaaccttctccagttcattctcaaccatatcatcccaatcagaccttgaaataatgccaa |
116 |
Q |
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||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| | || ||||||||| |
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| T |
20868 |
ttcatgaccctaatcacgaaattatccgaaag---aattttaaccttctccagttcattctcaaccttatcatcccaatcagacccttaagtaatgccaa |
20772 |
T |
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| Q |
117 |
ccacctttttgacaacattccgcattgcattttgctcaagcatccctttataacaatatggaagcacaacaacatcactccacaactcctccctttttaa |
216 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||||||| || ||| || |||| |||||||||||||| ||||| ||||| |||||| |
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| T |
20771 |
ccacctttttgacaacattctgcattgcattctgctcaagcatccctttgtagaaatgtgaaagcgcaacaacatcactcttcaacttctccccttttaa |
20672 |
T |
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| Q |
217 |
actcgtcgaaatcgtcaaatgtgtctcttc |
246 |
Q |
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|||| | |||||||||| |||||||||||| |
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| T |
20671 |
actccttgaaatcgtcacatgtgtctcttc |
20642 |
T |
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