View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10706_low_18 (Length: 251)

Name: NF10706_low_18
Description: NF10706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10706_low_18
NF10706_low_18
[»] chr3 (3 HSPs)
chr3 (13-98)||(22836263-22836348)
chr3 (173-240)||(22836120-22836187)
chr3 (13-89)||(22846592-22846668)


Alignment Details
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 22836348 - 22836263
Alignment:
Q  13 gaagaaagtaggtgtcaaaatcctttatctttcctttaaaaactaggttggtgggtatatcatcatatgcatatctaaattcatca 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22836348 gaagaaagtaggtgtcaaaatcctttatctttcctttaaaaactaggttggtgggtatatcatcatatgcatatctaaattcatca 22836263  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 22836187 - 22836120
Alignment:
Q  173 caataaaaagagggataaaaaggctgtcacaaaaaagttttttctctcatttttatatcactgttcat 240  Q
    ||||||||||||||| ||||||  |||||||||||||||||||||||||| |||||||||||||||||    
T  22836187 caataaaaagagggaaaaaaagattgtcacaaaaaagttttttctctcatatttatatcactgttcat 22836120  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 22846668 - 22846592
Alignment:
Q  13 gaagaaagtaggtgtcaaaatcctttatctttcctttaaaaactaggttggtgggtatatcatcatatgcatatcta 89  Q
    |||||| ||||||  ||||||  |||||||||||| | |||| ||||||||| ||||||  | ||||||||||||||    
T  22846668 gaagaaggtaggtaccaaaatattttatctttcctatcaaaattaggttggtaggtatactaccatatgcatatcta 22846592  T

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