View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10706_low_2 (Length: 441)
Name: NF10706_low_2
Description: NF10706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10706_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 39753925 - 39753490
Alignment:
| Q |
1 |
aaagaaagcaccagcacaagcaagaaagtcaagcttatcaactttccaaattttgtaagcttcatttatgtctatgagtccaggtagagcagagagaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39753925 |
aaagaaagcaccagcacaagcaagaaagtcaagcttatcaactttccaaattttgtaagcttcatttatgtctatgagtccaggtagagcagagagaatc |
39753826 |
T |
|
| Q |
101 |
actgaagcaataatagcaattggtgtataatacaatagatttgtcaaaaattgcagtgatatcatcactgtaatggccatcacaatgtttgatattaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39753825 |
actgaagcaataatagcaattggtgtataatacaatagatttgtcaaaaattgcagtgatatcatcactgtaatggccatcacaatgtttgatattaaac |
39753726 |
T |
|
| Q |
201 |
tttcacatccagcagcataattaacagcggttcgagagaatgaacctgccacaatacatatgac-----------------attttgttagttagtaaat |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39753725 |
tttcacatccagcagcataattaacagcggttcgagagaatgaacctgccacaatacatatgacatgttaatgcataaagtattttgttagttagtaaat |
39753626 |
T |
|
| Q |
284 |
atagtaatcaaataagaaccttcttaatttatttatgttgccaataagaagaggtctaaagaggacaccgtaatggattcagttcaattatttaatgcta |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39753625 |
atagtaatcaaataagaaccttcttaatttatttatgttgcc-------agaggtctaaagaggacaccgtaatggattcagttcaattatttaatgcta |
39753533 |
T |
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| Q |
384 |
atggagtttta-nnnnnnnattctacttaggtttaaatttaat |
425 |
Q |
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||||||||||| |||||||||||||||||||||||| |
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| T |
39753532 |
atggagttttattttttttattctacttaggtttaaatttaat |
39753490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 39745402 - 39745350
Alignment:
| Q |
1 |
aaagaaagcaccagcacaagcaagaaagtcaagcttatcaactttccaaattt |
53 |
Q |
| |
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|||||| || ||||||||||||||||| |||| |||||||| |||||||||| |
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| T |
39745402 |
aaagaaggctccagcacaagcaagaaaatcaattttatcaaccttccaaattt |
39745350 |
T |
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