View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10706_low_24 (Length: 240)
Name: NF10706_low_24
Description: NF10706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10706_low_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 22836358 - 22836548
Alignment:
| Q |
1 |
ttttaatggaaaccaaataagaacaaaaaa--taattaaccaaaaggaataattagcagctgtatagtggaagggaatataaagttattaacataaactt |
98 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
22836358 |
ttttattggaaaccaaataagaacaaaaaaaataattaaccaaaaggaataattagcagctgtatagtggaagggaatataaagttattaacatagaat- |
22836456 |
T |
|
| Q |
99 |
caaacgacaatccatttacacgtactgatactagtgtaccccacgtaaatttcatagaatatgcataaatatagctaacaaatctataaacttctgt |
195 |
Q |
| |
|
| | || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22836457 |
---atgc--ataaatatacacgtactgatactagtgtaccccacgtaaatttcatagaatatgcataaatatagctaacaaatctataaacttctgt |
22836548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 22846684 - 22846838
Alignment:
| Q |
8 |
ggaaaccaaataagaacaaaaaataattaaccaaaaggaataattagcagctgtatagtggaagggaatataaagttattaacataaacttcaaacgaca |
107 |
Q |
| |
|
|||||||||||||||| |||||| | |||| |||||||||||||||||||||||||||||||||||||||| |||| ||||| | | ||| |||| |
|
|
| T |
22846684 |
ggaaaccaaataagaaaaaaaaaa---tcaccacaaggaataattagcagctgtatagtggaagggaatataaacttatcaacatgatttcaaaatgaca |
22846780 |
T |
|
| Q |
108 |
atccatttacacgtactgatactagtgtaccccacgtaaatttcatagaatatgcataaa |
167 |
Q |
| |
|
|||| ||||| |||||||||| || ||||| || |||||||||||||||||||||||| |
|
|
| T |
22846781 |
atcc--ttacatgtactgatacaagggtaccgtacctaaatttcatagaatatgcataaa |
22846838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 22813562 - 22813666
Alignment:
| Q |
8 |
ggaaaccaaataagaacaaaa--aataattaaccaaaaggaataattagcagctgtatagtggaagggaatataaagttattaacataaacttcaaacga |
105 |
Q |
| |
|
|||||||||||||||| |||| ||||| | ||||||||||||||||||||||| |||||||||||||| ||| | ||||||||||| |||||||| || |
|
|
| T |
22813562 |
ggaaaccaaataagaaaaaaagaaataaatcaccaaaaggaataattagcagctctatagtggaagggactatgatgttattaacat-gacttcaaatga |
22813660 |
T |
|
| Q |
106 |
caatcc |
111 |
Q |
| |
|
|||||| |
|
|
| T |
22813661 |
caatcc |
22813666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University