View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10706_low_27 (Length: 239)
Name: NF10706_low_27
Description: NF10706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10706_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 37410859 - 37410635
Alignment:
| Q |
1 |
ccaaattattttttacaacacattttcgacaacttcgaatagcaaaacttatggcagcattcaaacatctgctacaatgatgccgacaacataaaccaaa |
100 |
Q |
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| T |
37410859 |
ccaaattattttttacaacacattttcaacaacttcgaatagcaaaacttatggcagcattcaaacttctgctacaatgatgccgacaacataaaccaaa |
37410760 |
T |
|
| Q |
101 |
ccgacaatatttcgaatcatggaagtcagtcctttacattgaagttacatgtacttcttattctgtttaactataataatctc--gtgataataaggacc |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37410759 |
ccgacaatatttcgaatcatggaagtcagtcctttacattgaagttacatgtacttcttattctgtttaactataataatctcttgtgataataaggacc |
37410660 |
T |
|
| Q |
199 |
tattatgacataaaatcactattac |
223 |
Q |
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||||||||||||||||||||||||| |
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| T |
37410659 |
tattatgacataaaatcactattac |
37410635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 16807409 - 16807625
Alignment:
| Q |
9 |
ttttttacaacacattttcgacaacttcgaatagcaaaacttatggcagcattcaaacatctgctacaatgatgccgacaacataaaccaaaccgacaat |
108 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||| |
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| T |
16807409 |
ttttttacaagacattttcgacaacttcgaatagcaaaacttatggcagcattcaaacttctgctataatgatgccgacaacataaaccaaacggacaat |
16807508 |
T |
|
| Q |
109 |
atttcgaatcatggaagtcagtcctttacattgaagttacatgtacttcttattctgtttaactataataatctc--gtgataataaggacctattatga |
206 |
Q |
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| T |
16807509 |
atttcggatcatggaagtcagtcctttacattgaagttacatgtacttcttattctgtttaactggaataatctcttgtgataataaggacctattatga |
16807608 |
T |
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| Q |
207 |
cataaaatcactattac |
223 |
Q |
| |
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||||||||||||||||| |
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| T |
16807609 |
cataaaatcactattac |
16807625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 23005860 - 23006085
Alignment:
| Q |
1 |
ccaaattattttttacaacacattttcgacaacttcgaatagcaaaacttatggcagcattcaaacatctgctacaatgatgccgacaacat-aaaccaa |
99 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||| ||||||| |
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| T |
23005860 |
ccaaattattttttacagcacattttcgacaacttcgaatagcaaaacttatagcagcattcaaacttctgctataatgatgccgacaacataaaaccaa |
23005959 |
T |
|
| Q |
100 |
accgacaatatttcgaatcatggaagtcagtcctttacattgaagttacatgtacttcttattctgtttaactataataatctc--gtgataataaggac |
197 |
Q |
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|| || | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
23005960 |
acggaacacatttcgaatcatggaagttagtcctttacattgaagttacatgtacttcttattctgtttaactggaataatctcttgtgataataaggac |
23006059 |
T |
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| Q |
198 |
ctattatgacataaaatcactattac |
223 |
Q |
| |
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||||||||| | |||| ||| ||||| |
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|
| T |
23006060 |
ctattatgagagaaaaccaccattac |
23006085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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