View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10706_low_6 (Length: 430)
Name: NF10706_low_6
Description: NF10706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10706_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 38237507 - 38237922
Alignment:
| Q |
1 |
aaagagaacatacgaaattcgataatggcgttcggtcaattatgtctaccgtctagtttaacatattacaactcgtgtataaatactaaggtcaagttta |
100 |
Q |
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| T |
38237507 |
aaagagaacatacgaaattcgataatggcgttcggtcaattatgtctaccgtttagtttaacatattacaactcgtgtataaatactaaggtcaagttta |
38237606 |
T |
|
| Q |
101 |
caagatagcccttgaaccatacccgtgttaataaactcaacaaaaagaaacattgacggtcctcaatagccaataaatcacactattttcttgttagcta |
200 |
Q |
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| T |
38237607 |
caagatagcccttgaaccatacccgtgttaataaactcaacaaaaagaaacattgacggtcctcaatagctaataaatcaaactattttcttgttagcta |
38237706 |
T |
|
| Q |
201 |
aacatttcttactatcaattgaaaacaatcacgtgctaagact-nnnnnnnnggtaataatttatagtttatttttagaggaagaatcattattagaaaa |
299 |
Q |
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| T |
38237707 |
aacatttcttactatcaattgaaaacaatcacgtgctaagactaaaaaaaaaggtgataatttatagtttatttttagaggaagaatcattattagaaaa |
38237806 |
T |
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| Q |
300 |
tgatatatcagttatacaattgt--tcgagggggtttgaactctgtctcttgaagtcacaatgtcaaaatattcccattgagccgacaccaagcatttaa |
397 |
Q |
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| T |
38237807 |
tgatatatcagttatacaattgttctcgagggggtttgaactctgtctcttgaagtcacaatgtcaaaatattcccattgagccgacaccaagcatttaa |
38237906 |
T |
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| Q |
398 |
gaatgacttaagttac |
413 |
Q |
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| T |
38237907 |
gaatgacttaagttac |
38237922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 176
Target Start/End: Original strand, 38213627 - 38213780
Alignment:
| Q |
25 |
atggcgttcggtcaattatgtctaccgtctagtttaacatattacaactcgtgtataaatactaaggtcaagtttacaagatagcccttgaacc--atac |
122 |
Q |
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||||||||||| ||||| ||||||| ||||||||||| ||||||||||| ||| ||||| ||| || ||| | ||||| ||| |||||| |||| |
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| T |
38213627 |
atggcgttcggccaattgtgtctactgtctagtttaatatattacaacttctgtttaaatgctacagtttggttgataagattacccctgaaccatatac |
38213726 |
T |
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| Q |
123 |
ccgtgttaataaactcaacaaaaagaaacattgacggtcctcaatagccaataa |
176 |
Q |
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| T |
38213727 |
ccgtgtcaatcaactcaacaaaaaagaacatagatagtcctcagttgccaataa |
38213780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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