View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10706_low_7 (Length: 425)
Name: NF10706_low_7
Description: NF10706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10706_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 2 - 400
Target Start/End: Complemental strand, 39979440 - 39979044
Alignment:
| Q |
2 |
acagaacattctagtaaattgtaatctctgccattaaaccaataaagttgtgaatttgccattttctaatgccattgtgatttgtgaagccatgctagtc |
101 |
Q |
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| T |
39979440 |
acagaacattctagtaaattgtaatctctgccattaaaccaataaagttgtgaatttgccattttctaatgccattgtgatttgtgaagccatgctagtc |
39979341 |
T |
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| Q |
102 |
catcatcgactaaattgtgaaaattctgatgagctagctacaaaacatagtagtgtatgattgcaacatgttcttcctgaagagaggataagaggagata |
201 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39979340 |
catcatcgactaaattgtgaaaattctgatgagct--ctacaaaacatagtagtgtatgattgcaacatgttcttcctgaagagaggataagaggagata |
39979243 |
T |
|
| Q |
202 |
gccacactttagacaaaatgattcctgcgaaacctatgctttctcacagattgaacatacttgtacctatggttcctgtgcattttttcccaatgcaaag |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39979242 |
gccacactttagacaaaatgattcctgcgaaacctatgctttctcacagattgaacatacttgtacctatggttcctgtgcattttttcccaatgcaaag |
39979143 |
T |
|
| Q |
302 |
aatagtcaatggtgttctagattcttaccattcagaaaagttttcaatccataaaactttttggaaaatgctaaggaataatatatactctcgttcctt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39979142 |
aatagtcaatggtgttctagattcttaccattcagaaaagttttcaatccataaaactttttggaaaatgctaaggaataatatatactctcgttcctt |
39979044 |
T |
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