View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10706_low_8 (Length: 419)
Name: NF10706_low_8
Description: NF10706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10706_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 43 - 400
Target Start/End: Original strand, 3338164 - 3338526
Alignment:
| Q |
43 |
cagagatcacaaaaagacagtggaaagcaccgaagagttagctgaattactctgaaatctctgaaacctacctaaaattaattagtgataataatatgat |
142 |
Q |
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| T |
3338164 |
cagagatcacaaaaagacagtggaaagcaccgaagagttagctgaattactctgaaatctctgaaacctacctaaaattaattagtgataataatatgat |
3338263 |
T |
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| Q |
143 |
attaatcacaagtcattgatatatattgagaataacaactcccgtgcgtgcgcaaatactaaaacccatgcatccaaagatgccctttgtcggc----ct |
238 |
Q |
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| T |
3338264 |
attaatcacaagtcattgatatatattgagaataacaactcccgtgcgtgcgcaaatactaaaacccatgcatccaaagatgccctttgtcggcctctct |
3338363 |
T |
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| Q |
239 |
ctctctcttatgctccatccaatgcactcatggtggatcccacaa-ccctcctcctcttcatttcattatatgtgtgtgagtttgtcagattcttagacg |
337 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3338364 |
ctctctcttatgctccatccaatgcactcatggtggaccccacaacccctcctcctcttcatttcattatctgtgtgtgagtttgtcagattcttagacg |
3338463 |
T |
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| Q |
338 |
cgtgcttacttcaaatccaagtcttatcctcaaagcatttctcaattagggtgacaaatgaca |
400 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3338464 |
cgtgcttacttcaaatccaagtcttatcctcaaatcatttctcaattagggtgacaaatgaca |
3338526 |
T |
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