View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10707_high_1 (Length: 574)
Name: NF10707_high_1
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 495; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 558
Target Start/End: Original strand, 27470326 - 27470880
Alignment:
| Q |
1 |
gtagttgttcgatgaagcgttaaaggagaatttagagccatgccactaagaatttgtgaactattgtggatgaaacaagtgctagaaaatttatagatac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27470326 |
gtagttgttcgatgaagcgttaaaggagaatttagagcca--ccactaagaatttgtgaattattgtggatgaaacaagtgctagaaaatttatagatac |
27470423 |
T |
|
| Q |
101 |
aatgaaattggtgtacattaatcaaagagaagttgtagttggattgataactacaacctacattccttatggacatcagctgaccgatgtgttaacgaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27470424 |
aatgaaattggtgtacattaatcaaagagaagttgtagttggattgataactacaacctacattccttatggacatcagctgaccgatgtgttaacgaag |
27470523 |
T |
|
| Q |
201 |
ggtttaccgaaatagcgatttaaccaacttacttgcaagttttgaatgattggtatacattcatcagcttgaggggaagtgttgtaaatattaatatttg |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27470524 |
ggtttaccaaaatagcgatttaaccaacttacttgcaagttttgaatgattggtatacattcatcagcttgaggggaagtgttgtaaatattaatatttg |
27470623 |
T |
|
| Q |
301 |
tatacgagaccaattagccaaactcattaggtttagatttgtctctatttaagcaagttaaatttaaagtattaaaatttacaactttaaaataatattc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
27470624 |
tatacgagaccaattagccaaactcattaggtttagatttgtctctatttaagcaagttaaatttaaagcattataatttacaactttaaaataatattc |
27470723 |
T |
|
| Q |
401 |
agaaaataatttcacatttctacattcattctcattctatcgtttgatgtaatgatctttcccatatcaatacaaaaattatttttcagcttctgaattt |
500 |
Q |
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||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
27470724 |
agaaaatcatttcacatttctatgttcagtctcattctatcgtttgatgtaatgatttttcccatatcaatacaaaaatta-ttttcagcctctgaattt |
27470822 |
T |
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| Q |
501 |
tctctcttccatagtctctatcaagattcctaacattataaacccttgtaatactttc |
558 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27470823 |
tctctcttccgtagtctctatcaagattcctaacattataaacccttgtaatactttc |
27470880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 429 - 555
Target Start/End: Complemental strand, 28093341 - 28093218
Alignment:
| Q |
429 |
ttctcattctatcgtttgatgtaatgatctttcccatatcaatacaaaaattatttttcagcttctgaattttctctcttccatagtctctatcaagatt |
528 |
Q |
| |
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||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||||| || || ||||||||| |||||||| ||| |||||||| |
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| T |
28093341 |
ttctcattctatcatttgatgtaatgaactttcgcatatcaatacaaaatttattttt-agtttgaacattttctcttttccatagactc--tcaagatt |
28093245 |
T |
|
| Q |
529 |
cctaacattataaacccttgtaatact |
555 |
Q |
| |
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|||| ||||| ||||||| |||||||| |
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|
| T |
28093244 |
cctaccattaaaaaccctagtaatact |
28093218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 239
Target Start/End: Complemental strand, 27913861 - 27913767
Alignment:
| Q |
145 |
tgataactacaacctacattccttatggacatcagctgaccgatgtgttaacgaagggtttaccgaaatagcgatttaaccaacttacttgcaag |
239 |
Q |
| |
|
||||||| ||||| |||||||||||||| ||||| |||| |||||||||| |||||| ||| | | | | ||||| ||| |||||||||||||| |
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| T |
27913861 |
tgataacgacaacgtacattccttatgggcatcatctgaaagatgtgttaaggaagggcttatcaacagaacgattcaactaacttacttgcaag |
27913767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 287
Target Start/End: Original strand, 4464770 - 4464871
Alignment:
| Q |
186 |
gatgtgttaacgaagggtttaccgaaatagcgatttaaccaacttacttgcaagttttgaatgattggtatacattcatcagcttgaggggaagtgttgt |
285 |
Q |
| |
|
||||||||||| ||||||||||| | | | |||| |||||||||||||||||| || ||||||| | ||| ||||| ||||||||| || |||||||| |
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|
| T |
4464770 |
gatgtgttaacaaagggtttaccaacaaaaagattcaaccaacttacttgcaagcttagaatgatagatatctattcaccagcttgagagggagtgttgt |
4464869 |
T |
|
| Q |
286 |
aa |
287 |
Q |
| |
|
|| |
|
|
| T |
4464870 |
aa |
4464871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 8390889 - 8390971
Alignment:
| Q |
1 |
gtagttgttcgatgaagcgttaaaggagaatttagagccatgccactaagaatttgtgaactattgtggatgaaacaagtgcta |
84 |
Q |
| |
|
||||||| || || ||||||| ||| ||| |||||||| | | ||||| ||||||||| |||||||||||||||||||||||| |
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| T |
8390889 |
gtagttgctcaatcaagcgttgaagtaga-tttagagctacgacactagaaatttgtgagctattgtggatgaaacaagtgcta |
8390971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 377 - 424
Target Start/End: Original strand, 17219552 - 17219599
Alignment:
| Q |
377 |
atttacaactttaaaataatattcagaaaataatttcacatttctaca |
424 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||| ||||||| |
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|
| T |
17219552 |
atttacatctttaaaataatattcagaaaatcatttcacaattctaca |
17219599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 1136182 - 1136127
Alignment:
| Q |
144 |
ttgataactacaacctacattccttatggacatcagctgaccgatgtgttaacgaa |
199 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||| |||| ||||||||| |||| |
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|
| T |
1136182 |
ttgataactacaaccaacattccttctggacatcaactgaaagatgtgttagcgaa |
1136127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 27471773 - 27471834
Alignment:
| Q |
140 |
tggattgataactacaacctacattccttatggacatcagctgaccgatgtgttaacgaagg |
201 |
Q |
| |
|
||||| ||||||||||||||||||||||||| | |||||| |||| |||||||||| |||| |
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|
| T |
27471773 |
tggatagataactacaacctacattccttataggcatcagttgacaaatgtgttaacaaagg |
27471834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 14302488 - 14302583
Alignment:
| Q |
9 |
tcgatgaagcgttaaaggagaatttagagccatgccactaagaatttgtgaactattgtggatgaaacaagtgctagaaaatttatagatacaatg |
104 |
Q |
| |
|
||||| ||||| | ||| |||||| | ||| ||| || ||| ||||||||||||| ||| ||||||||| || ||||||||||| |||||||||| |
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|
| T |
14302488 |
tcgatcaagcgctgaagtagaattcatagctatgacattaataatttgtgaactaatgtcgatgaaacatgtcatagaaaatttaaagatacaatg |
14302583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 30996590 - 30996648
Alignment:
| Q |
44 |
cactaagaatttgtgaactattgtggatgaaacaagtgctagaaaatttatagatacaa |
102 |
Q |
| |
|
||||| |||||||||||||||| | |||||||||| |||||||| |||| |||||||| |
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|
| T |
30996590 |
cactaggaatttgtgaactattatagatgaaacaaatgctagaagatttgaagatacaa |
30996648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 30996869 - 30996930
Alignment:
| Q |
229 |
ttacttgcaagttttgaatgattggtatacattcatcagcttgaggggaagtgttgtaaata |
290 |
Q |
| |
|
|||||| |||||| ||||||| | ||| |||||| ||||||||| |||||||||||||||| |
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|
| T |
30996869 |
ttactttcaagttgagaatgatagatatccattcaccagcttgagaggaagtgttgtaaata |
30996930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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