View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10707_high_13 (Length: 352)

Name: NF10707_high_13
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10707_high_13
NF10707_high_13
[»] chr6 (1 HSPs)
chr6 (42-339)||(7368041-7368344)
[»] chr3 (2 HSPs)
chr3 (120-339)||(53161203-53161430)
chr3 (42-103)||(53161486-53161547)
[»] chr4 (3 HSPs)
chr4 (42-219)||(51033011-51033189)
chr4 (250-300)||(51032906-51032956)
chr4 (253-300)||(18809196-18809243)
[»] chr7 (6 HSPs)
chr7 (112-235)||(45623596-45623720)
chr7 (42-219)||(26643202-26643383)
chr7 (42-101)||(45623488-45623547)
chr7 (250-300)||(26643435-26643485)
chr7 (250-339)||(45631922-45632021)
chr7 (253-300)||(18565799-18565846)
[»] chr2 (4 HSPs)
chr2 (112-218)||(39905226-39905329)
chr2 (250-297)||(39905394-39905439)
chr2 (253-300)||(44483404-44483451)
chr2 (302-351)||(39905455-39905503)
[»] chr5 (1 HSPs)
chr5 (261-300)||(19833692-19833731)
[»] scaffold0164 (1 HSPs)
scaffold0164 (259-300)||(16553-16594)


Alignment Details
Target: chr6 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 42 - 339
Target Start/End: Original strand, 7368041 - 7368344
Alignment:
Q  42 caaatgtaacttcttctgcctcttttccattacaagcttcgattacaatttcaccatctaccnnnnnnnn---------attactcccatttctttccat 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||| ||||||||||||||    
T  7368041 caaatgtaacttcttctgcctcttttccattacaagcttcgattacaatttcaccatctaccttttttattttatttttattactaccatttctttccat 7368140  T
Q  133 tgatattcttaacatgaaatgaggtgggctatttaaattaattcattccttaatcctttcttcttataattgtatacaaatatcttatatggaaagggat 232  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7368141 tgatattctcaacatgaaatgaggtgggctatttaaattaattcattccttaatcctttcttcttataattgtatacaaatatcttatatggaaagggat 7368240  T
Q  233 aacnnnnnnnnnnnnnnctaaagggagaggagttgaaaggaaatggtaaattctatggcatgtttcaa-cgacttgaaatctaatttcttttctatgata 331  Q
    |||              ||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||    
T  7368241 aac----caaaaaaaaactaaagggagaggagttgaaaggaaatggtaaattgtatggcatgtttcaagtgacttgaaatctaatttcttttctatgata 7368336  T
Q  332 tctcttct 339  Q
    ||||||||    
T  7368337 tctcttct 7368344  T

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Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 120 - 339
Target Start/End: Complemental strand, 53161430 - 53161203
Alignment:
Q  120 catttctttccattgatattcttaacatgaaatgaggtgggctatttaaattaattcattccttaatcctttcttcttataattgtatacaaatatctta 219  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53161430 catttctttccattgatattctcaacatgaaatgaggtgggctatttaaattaattcattccttaatcctttcttcttataattgtatacaaatatctta 53161331  T
Q  220 t-atggaaagggataacnnnnnnnnnnnnnnctaaagggagaggagttgaaaggaaatggtaaattctatggcatgtttcaa-----------cgacttg 307  Q
    | |||||||| ||||||              |||||||| ||||||||||||| || |||||||||||||||||||||||||            ||||||    
T  53161330 taatggaaagagataac----caaaatataactaaagggggaggagttgaaagtaactggtaaattctatggcatgtttcaaatcaaaggctgtgacttg 53161235  T
Q  308 aaatctaatttcttttctatgatatctcttct 339  Q
    ||||||||||||||||||||||||||||||||    
T  53161234 aaatctaatttcttttctatgatatctcttct 53161203  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 53161547 - 53161486
Alignment:
Q  42 caaatgtaacttcttctgcctcttttccattacaagcttcgattacaatttcaccatctacc 103  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  53161547 caaatgtaacttcttctgcctcttttccattacaaccttcgattacaatttcaccttctacc 53161486  T

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Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 42 - 219
Target Start/End: Complemental strand, 51033189 - 51033011
Alignment:
Q  42 caaatgtaacttcttctgcctcttttccattacaagcttcgattacaatttcaccatctaccnnnnnnnn-attactcccatttctttccattgatattc 140  Q
    ||||||||||||||||| |||||||||||||| || ||||| ||||||||||| | ||||||         |||||| ||||||||||||||||||||||    
T  51033189 caaatgtaacttcttctacctcttttccattataaccttcggttacaatttcatcttctaccatttttttcattactaccatttctttccattgatattc 51033090  T
Q  141 ttaacatgaaatgaggtgggctatttaaattaattcattccttaatcctttcttcttataattgtatacaaatatctta 219  Q
    | ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  51033089 tcaacatgaaatgaggtggaccatttaaattaattcattccttaatcctttcttcttataattgtatagaaatatctta 51033011  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 300
Target Start/End: Complemental strand, 51032956 - 51032906
Alignment:
Q  250 ctaaagggagaggagttgaaaggaaatggtaaattctatggcatgtttcaa 300  Q
    ||||||||| ||||||||||||||||||| ||||| |||||||||||||||    
T  51032956 ctaaagggaaaggagttgaaaggaaatggcaaattttatggcatgtttcaa 51032906  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 18809196 - 18809243
Alignment:
Q  253 aagggagaggagttgaaaggaaatggtaaattctatggcatgtttcaa 300  Q
    ||||| |||||||||||||||||||| |||||||||| | ||||||||    
T  18809196 aagggggaggagttgaaaggaaatggaaaattctatgacgtgtttcaa 18809243  T

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Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 112 - 235
Target Start/End: Original strand, 45623596 - 45623720
Alignment:
Q  112 attactcccatttctttccattgatattcttaacatgaaatgaggtgggctatttaaattaattcattccttaatcctttcttcttataattgtatacaa 211  Q
    |||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45623596 attactaccatttctttccattcatattctcaacatgaaatgaggtgggctatttaaattaattcattctttaatcctttcttcttataattgtatacaa 45623695  T
Q  212 atatcttat-atggaaagggataac 235  Q
    ||||||||| |||||||| ||||||    
T  45623696 atatcttataatggaaagagataac 45623720  T

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Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 42 - 219
Target Start/End: Original strand, 26643202 - 26643383
Alignment:
Q  42 caaatgtaacttcttctgcctcttttccattacaagcttcgattacaatttcaccatctaccnnnnnnnn-attactcccatttctttccattgatattc 140  Q
    ||||||||||||||||| | ||||||||||||||| ||||| ||||||||||| | ||||||         |||||| |||||||||||||| |||||||    
T  26643202 caaatgtaacttcttctacgtcttttccattacaaccttcggttacaatttcatcttctaccatttttttcattactaccatttctttccatcgatattc 26643301  T
Q  141 ttaacatgaaatgaggtgggctatttaaattaattcattccttaatcctttcttctt---ataattgtatacaaatatctta 219  Q
    | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  26643302 tcaacatgaaatgaggtgggccatttaaattaattcattccttaatcctttcttcttataataattgtatacaaatatctta 26643383  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 45623488 - 45623547
Alignment:
Q  42 caaatgtaacttcttctgcctcttttccattacaagcttcgattacaatttcaccatcta 101  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  45623488 caaatgtaacttcttctgcctcttttccattacaactttcgattacaatttcaccttcta 45623547  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 300
Target Start/End: Original strand, 26643435 - 26643485
Alignment:
Q  250 ctaaagggagaggagttgaaaggaaatggtaaattctatggcatgtttcaa 300  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  26643435 ctaaagggaaaggagttgaaaggaaatggtaaattccatggcatgtttcaa 26643485  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 339
Target Start/End: Original strand, 45631922 - 45632021
Alignment:
Q  250 ctaaagggagaggagttgaaaggaaatggtaaattctatggcatgtttcaac----------gacttgaaatctaatttcttttctatgatatctcttct 339  Q
    ||||||||  ||||||||||| |||||||||||||||||||||| ||| ||           ||||||||||||||||||||||||||||||||||||||    
T  45631922 ctaaaggggaaggagttgaaatgaaatggtaaattctatggcatttttaaatcaaaggttgtgacttgaaatctaatttcttttctatgatatctcttct 45632021  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 18565799 - 18565846
Alignment:
Q  253 aagggagaggagttgaaaggaaatggtaaattctatggcatgtttcaa 300  Q
    ||||| |||||||||||||||||||| |||||||||||| | ||||||    
T  18565799 aagggggaggagttgaaaggaaatggaaaattctatggcgtatttcaa 18565846  T

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Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 39905226 - 39905329
Alignment:
Q  112 attactcccatttctttccattgatattcttaacatgaaatgaggtgggctatttaaattaattcattccttaatcctttcttcttataattgtatacaa 211  Q
    |||||| ||||| ||||||||||||||||| ||||||||||||||| ||  || ||||||||||||||||||||||||||||||||   ||||||| |||    
T  39905226 attactaccattgctttccattgatattctcaacatgaaatgaggtaggtcatataaattaattcattccttaatcctttcttctt---attgtatccaa 39905322  T
Q  212 atatctt 218  Q
    |||||||    
T  39905323 atatctt 39905329  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 39905394 - 39905439
Alignment:
Q  250 ctaaagggagaggagttgaaaggaaatggtaaattctatggcatgttt 297  Q
    |||||||||||||  |||||||||||||||||||||||| ||||||||    
T  39905394 ctaaagggagagg--ttgaaaggaaatggtaaattctatagcatgttt 39905439  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 300
Target Start/End: Complemental strand, 44483451 - 44483404
Alignment:
Q  253 aagggagaggagttgaaaggaaatggtaaattctatggcatgtttcaa 300  Q
    ||||| |||||||||||||||||| | |||||||||||| ||||||||    
T  44483451 aagggggaggagttgaaaggaaattgaaaattctatggcgtgtttcaa 44483404  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 351
Target Start/End: Original strand, 39905455 - 39905503
Alignment:
Q  302 gacttgaaatctaatttcttttctatgatatctcttctctgcttctccac 351  Q
    |||||||||||||||||| ||||||||||| ||||||| || ||||||||    
T  39905455 gacttgaaatctaatttc-tttctatgatacctcttctttgtttctccac 39905503  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 300
Target Start/End: Original strand, 19833692 - 19833731
Alignment:
Q  261 ggagttgaaaggaaatggtaaattctatggcatgtttcaa 300  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  19833692 ggagttgaaaggaaatggaaaattctatggcgtgtttcaa 19833731  T

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Target: scaffold0164 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 16553 - 16594
Alignment:
Q  259 gaggagttgaaaggaaatggtaaattctatggcatgtttcaa 300  Q
    |||||||||||||||||||  |||||||||||| ||||||||    
T  16553 gaggagttgaaaggaaatgaaaaattctatggcgtgtttcaa 16594  T

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