View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10707_high_15 (Length: 344)

Name: NF10707_high_15
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10707_high_15
NF10707_high_15
[»] chr5 (2 HSPs)
chr5 (18-336)||(33541525-33541844)
chr5 (182-272)||(18571146-18571239)
[»] chr6 (8 HSPs)
chr6 (115-269)||(7041467-7041621)
chr6 (115-268)||(7025721-7025880)
chr6 (122-257)||(7046817-7046952)
chr6 (235-330)||(213008-213103)
chr6 (185-272)||(9170858-9170945)
chr6 (115-272)||(7012785-7012948)
chr6 (185-272)||(9159483-9159570)
chr6 (185-268)||(7029854-7029937)
[»] chr3 (14 HSPs)
chr3 (115-247)||(9494821-9494953)
chr3 (144-254)||(9448314-9448424)
chr3 (144-254)||(9343845-9343955)
chr3 (115-242)||(9432867-9432994)
chr3 (115-242)||(41985599-41985726)
chr3 (115-225)||(9407337-9407447)
chr3 (117-247)||(9695629-9695759)
chr3 (115-262)||(9402350-9402500)
chr3 (115-174)||(9425544-9425603)
chr3 (115-174)||(9617549-9617608)
chr3 (115-262)||(9420589-9420739)
chr3 (117-271)||(9336513-9336667)
chr3 (125-242)||(9646382-9646499)
chr3 (125-242)||(9655375-9655492)
[»] chr2 (1 HSPs)
chr2 (115-174)||(20694387-20694446)
[»] chr1 (4 HSPs)
chr1 (115-195)||(18991175-18991255)
chr1 (115-168)||(4428602-4428655)
chr1 (115-211)||(4439831-4439927)
chr1 (118-268)||(246841-246991)
[»] chr7 (2 HSPs)
chr7 (150-269)||(450102-450221)
chr7 (114-174)||(3695660-3695720)
[»] chr8 (1 HSPs)
chr8 (116-225)||(44688820-44688929)


Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 33541525 - 33541844
Alignment:
Q  18 tatccaagtccaagatacatcctgtagttgtactagtcaaagcccttgggcgatggacaaatccgaagtgttgaaatgatgagaagacatttttcaaaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33541525 tatccaagtccaagatacatcctgtagttgtactagtcaaatgccttgggcgatggacaaatccgaagtgttgaaatgatgggaagacatttttcaaaaa 33541624  T
Q  118 -gatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaa 216  Q
     || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33541625 agaggacacaattacctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaa 33541724  T
Q  217 cttcacccactccgtctccttctcattaagcttaaacaaatgaatccttacaggattgtgaccagggaagccgatacgtgtacaatcataaacatccact 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33541725 cttcacccactccgtctccttctcattaagcttaaacaaatgaatccttacaggattgtgaccagggaagccgatacgtgtacaatcataaacatccact 33541824  T
Q  317 aacaacaaatcacctttgct 336  Q
    |||||||||||||| |||||    
T  33541825 aacaacaaatcacccttgct 33541844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 18571146 - 18571239
Alignment:
Q  182 cctaagaacaaaacaa---tatctcctaaactctttaacttcacccactccgtctccttctcattaagcttaaacaaatgaatccttacaggat 272  Q
    ||||||||||||||||   |||| ||||||||| | || |||||||||| | |||||||||||| ||||||||| |||| ||||||||| ||||    
T  18571146 cctaagaacaaaacaactgtatcccctaaactcgtcaatttcacccacttcttctccttctcatcaagcttaaagaaatcaatccttacgggat 18571239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 115 - 269
Target Start/End: Original strand, 7041467 - 7041621
Alignment:
Q  115 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactcttt 214  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||  |||| || |||||  |  | || |||||||||||  |||| ||||||||  |     
T  7041467 aaagatgacacaattccctttggcaacgcacaaatccgaagcagaaacagagaacgaacatacttctcccaagaacaaaaccctatcccctaaactagtc 7041566  T
Q  215 aacttcacccactccgtctccttctcattaagcttaaacaaatgaatccttacag 269  Q
    ||||||||||||| | |||||||||||||||| |||||||||| ||||| |||||    
T  7041567 aacttcacccacttcttctccttctcattaagtttaaacaaatcaatccatacag 7041621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 268
Target Start/End: Original strand, 7025721 - 7025880
Alignment:
Q  115 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtc--agccc----ctaagaacaaaacaatatctcctaaa 208  Q
    |||||||||| ||||||||||||||||  ||||||| |||||| | |||||||| |||||  |  | |||    | |||||||||||  |||||||||||    
T  7025721 aaagatgacagaattccctttggcaacacacaaatctgaagcacaagcagaaaacgaacataccaaccccaaccccaagaacaaaaccctatctcctaaa 7025820  T
Q  209 ctctttaacttcacccactccgtctccttctcattaagcttaaacaaatgaatccttaca 268  Q
    ||| | ||||||||||||| | ||||||||||||||||||||||||||| ||||||||||    
T  7025821 ctcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 7025880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 122 - 257
Target Start/End: Original strand, 7046817 - 7046952
Alignment:
Q  122 acacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaacttca 221  Q
    ||||||||||||||||||||  ||||||| |||  ||| |||||||| ||||| |    ||| |||||||||||  |||| ||||||||| |||||||||    
T  7046817 acacaattccctttggcaacatacaaatctgaaaaagaagcagaaaacgaacattttatccccaagaacaaaactttatcccctaaactcgttaacttca 7046916  T
Q  222 cccactccgtctccttctcattaagcttaaacaaat 257  Q
    |||||| | |||||||||||||||||||||||||||    
T  7046917 cccacttcttctccttctcattaagcttaaacaaat 7046952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 235 - 330
Target Start/End: Complemental strand, 213103 - 213008
Alignment:
Q  235 cttctcattaagcttaaacaaatgaatccttacaggattgtgaccagggaagccgatacgtgtacaatcataaacatccactaacaacaaatcacc 330  Q
    |||||||||||||||||||| |||||||||||||||||  ||| ||||||| ||  ||||| |||| ||||||||||| |||||||||||||||||    
T  213103 cttctcattaagcttaaacacatgaatccttacaggatcatgatcagggaacccagtacgtatacactcataaacatctactaacaacaaatcacc 213008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 185 - 272
Target Start/End: Original strand, 9170858 - 9170945
Alignment:
Q  185 aagaacaaaacaatatctcctaaactctttaacttcacccactccgtctccttctcattaagcttaaacaaatgaatccttacaggat 272  Q
    |||||||||||  |||| ||||||||| |||| |||||||||| | ||||||||||||||||||||||||||| ||||||||||||||    
T  9170858 aagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcattaagcttaaacaaatcaatccttacaggat 9170945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 115 - 272
Target Start/End: Original strand, 7012785 - 7012948
Alignment:
Q  115 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtc--agccc----ctaagaacaaaacaatatctcctaaa 208  Q
    |||||||||| ||||||||||||||||  ||||||| |||||| | |||||||| |||||  |  | |||    | ||||||||||   |||||||||||    
T  7012785 aaagatgacagaattccctttggcaacacacaaatccgaagcacaggcagaaaacgaacataccaaccccaaccccaagaacaaaatcctatctcctaaa 7012884  T
Q  209 ctctttaacttcacccactccgtctccttctcattaagcttaaacaaatgaatccttacaggat 272  Q
    ||  | ||||||||||||| | ||||||||||||||||||||||||||| ||| ||||||||||    
T  7012885 cttgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaattcttacaggat 7012948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 185 - 272
Target Start/End: Complemental strand, 9159570 - 9159483
Alignment:
Q  185 aagaacaaaacaatatctcctaaactctttaacttcacccactccgtctccttctcattaagcttaaacaaatgaatccttacaggat 272  Q
    |||||||||||  |||| ||||||||| |||| |||||||||| | |||||||||| |||||||||||||||| ||||||||||||||    
T  9159570 aagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcgttaagcttaaacaaatcaatccttacaggat 9159483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 7029854 - 7029937
Alignment:
Q  185 aagaacaaaacaatatctcctaaactctttaacttcacccactccgtctccttctcattaagcttaaacaaatgaatccttaca 268  Q
    |||||||||||  |||| || |||||| | ||||||||||||| | ||||||||||||||||||||||||||| ||||||||||    
T  7029854 aagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 7029937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 247
Target Start/End: Complemental strand, 9494953 - 9494821
Alignment:
Q  115 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactcttt 214  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| |||||||| |||||  ||  ||| |||||||||||  |||| ||||||||| |     
T  9494953 aaagatgacacaattccctttggaaacgcacaaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctatcccctaaactcatc 9494854  T
Q  215 aacttcacccactccgtctccttctcattaagc 247  Q
    || ||||||||   | |||||||||||| ||||    
T  9494853 aaattcacccatctcatctccttctcatcaagc 9494821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 144 - 254
Target Start/End: Original strand, 9448314 - 9448424
Alignment:
Q  144 acaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaacttcacccactccgtctccttctcatt 243  Q
    ||||||| |||||||| |||||||| |||||||||  ||| |||||||||||| |||| |||||| |  ||||||||||||| | | ||||||||||||     
T  9448314 acaaatccgaagcagaagcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctccttctcata 9448413  T
Q  244 aagcttaaaca 254  Q
    |||||||||||    
T  9448414 aagcttaaaca 9448424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 144 - 254
Target Start/End: Original strand, 9343845 - 9343955
Alignment:
Q  144 acaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaacttcacccactccgtctccttctcatt 243  Q
    ||||||| |||||||| |||||||| ||||| |||  ||| |||||||||||| |||| |||||| |  ||||||||||||||| | ||||| ||||||     
T  9343845 acaaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttcacccacttcttctccatctcatc 9343944  T
Q  244 aagcttaaaca 254  Q
    |||||||||||    
T  9343945 aagcttaaaca 9343955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 115 - 242
Target Start/End: Original strand, 9432867 - 9432994
Alignment:
Q  115 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactcttt 214  Q
    |||||||| ||||||||||| || |||  ||||||| || || || |||||||||||| | |||  ||||| |||||||||  ||||||||||| ||||     
T  9432867 aaagatgatacaattcccttcggaaacacacaaatccgaggctgaagcagaaaaggaatattcaagccctatgaacaaaaccctatctcctaaattcttg 9432966  T
Q  215 aacttcacccactccgtctccttctcat 242  Q
    | ||||||||||| | ||||||||||||    
T  9432967 atcttcacccacttcctctccttctcat 9432994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 115 - 242
Target Start/End: Original strand, 41985599 - 41985726
Alignment:
Q  115 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactcttt 214  Q
    ||||||||||||||| |||||| |||| |||||||| |||||||| |||||||| |||||  ||  ||| |||||||||||  |||| |||||||||       
T  41985599 aaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcc 41985698  T
Q  215 aacttcacccactccgtctccttctcat 242  Q
    ||||| ||||| | | ||||||||||||    
T  41985699 aacttgacccatttcttctccttctcat 41985726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 9407337 - 9407447
Alignment:
Q  115 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactcttt 214  Q
    ||||| |||||||||||||||||||||  ||||||| ||||| || |||||||| |||||  ||  | | |||||||||||  |||| ||||||||| |     
T  9407337 aaagaagacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctatcccctaaactcatc 9407436  T
Q  215 aacttcaccca 225  Q
    |||||||||||    
T  9407437 aacttcaccca 9407447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 247
Target Start/End: Complemental strand, 9695759 - 9695629
Alignment:
Q  117 agatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaa 216  Q
    |||||||||||||||| || |||||  |||| || |||||||||||||| || ||||||||  |||| || ||||||||  |||| |||||| |  | ||    
T  9695759 agatgacacaattcccatttgcaacacacaactctgaagcagatgcagagaacgaacagtcttcccccaaaaacaaaaccctatcccctaaattggtcaa 9695660  T
Q  217 cttcacccactccgtctccttctcattaagc 247  Q
    ||| ||||||| | |||||||||||| ||||    
T  9695659 cttgacccacttcttctccttctcatcaagc 9695629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 262
Target Start/End: Original strand, 9402350 - 9402500
Alignment:
Q  115 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctt- 213  Q
    |||||||| |||||||||||| | |||  ||||||| || ||||| |||||||||||| | |  | ||||| |||||||||  |||||| |||| ||||     
T  9402350 aaagatgatacaattccctttaggaacacacaaatctgaggcagaggcagaaaaggaatattttgtccctatgaacaaaaccctatctcttaaattcttc 9402449  T
Q  214 --taacttcacccactccgtctccttctcattaagcttaaacaaatgaatc 262  Q
       ||||||||||||| | |||||||||||| |||  |||||||| |||||    
T  9402450 tcgaacttcacccacttcctctccttctcatcaagtctaaacaaacgaatc 9402500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 9425544 - 9425603
Alignment:
Q  115 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaaca 174  Q
    |||||||||||||||||||||||||||  ||||||| ||||| || |||||||| |||||    
T  9425544 aaagatgacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaaca 9425603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 9617608 - 9617549
Alignment:
Q  115 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaaca 174  Q
    ||||||||||||||||||||||| |||  ||||||| |||||||| |||||||| |||||    
T  9617608 aaagatgacacaattccctttggaaacacacaaatctgaagcagaagcagaaaatgaaca 9617549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 262
Target Start/End: Original strand, 9420589 - 9420739
Alignment:
Q  115 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctt- 213  Q
    |||||||| |||||||||||| | |||  ||||||| || ||||| |||||||||||| | |  | ||||| |||||||||  |||||| |||| ||||     
T  9420589 aaagatgatacaattccctttaggaacacacaaatctgaggcagaggcagaaaaggaatattttgtccctatgaacaaaaccctatctcttaaattcttc 9420688  T
Q  214 --taacttcacccactccgtctccttctcattaagcttaaacaaatgaatc 262  Q
       || |||||||||| | |||||||||||| |||  |||||||| |||||    
T  9420689 tcgaatttcacccacttcctctccttctcatcaagtctaaacaaacgaatc 9420739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 271
Target Start/End: Original strand, 9336513 - 9336667
Alignment:
Q  117 agatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaa 216  Q
    |||||||||||||||| |||||||    ||| || |||||||| |||||||| |||||  ||  ||| |||||||||||  ||||||||||| || | |     
T  9336513 agatgacacaattcccattggcaaaacccaactcggaagcagaagcagaaaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcag 9336612  T
Q  217 cttcacccactccgtctccttctcattaagcttaaacaaatgaatccttacagga 271  Q
    ||| ||||||    |||| ||||||| |||| |||||| || ||||| |||||||    
T  9336613 cttgacccaccttttctctttctcatcaagcctaaacacatcaatccatacagga 9336667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 242
Target Start/End: Complemental strand, 9646499 - 9646382
Alignment:
Q  125 caattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaacttcaccc 224  Q
    ||||||||||||| |||  ||||||| ||||| ||||||||||| |||||  |  | || || ||||||||  |||| |||||| || | ||||||||||    
T  9646499 caattccctttggaaacacacaaatccgaagctgatgcagaaaacgaacatccttcgccaaaaaacaaaaccctatcccctaaattcatcaacttcaccc 9646400  T
Q  225 actccgtctccttctcat 242  Q
    | | | ||||||||||||    
T  9646399 atttcttctccttctcat 9646382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 242
Target Start/End: Complemental strand, 9655492 - 9655375
Alignment:
Q  125 caattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaacttcaccc 224  Q
    ||||||||||||| |||  ||||||| ||||| ||||||||||| |||||  |  | || || ||||||||  |||| |||||| || | ||||||||||    
T  9655492 caattccctttggaaacacacaaatccgaagctgatgcagaaaacgaacatccttcgcccaaaaacaaaaccctatcccctaaattcatcaacttcaccc 9655393  T
Q  225 actccgtctccttctcat 242  Q
    | | | ||||||||||||    
T  9655392 atttcttctccttctcat 9655375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 20694446 - 20694387
Alignment:
Q  115 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaaca 174  Q
    |||||||||||||||||||||||||||  ||||||| |||||||| |||||||| |||||    
T  20694446 aaagatgacacaattccctttggcaacacacaaatccgaagcagaagcagaaaacgaaca 20694387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 195
Target Start/End: Original strand, 18991175 - 18991255
Alignment:
Q  115 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaac 195  Q
    ||||| |||||||||||||||| |||| || |||||||||||||| |||||||| |||||  ||  ||| |||||||||||    
T  18991175 aaagacgacacaattccctttgacaacagataaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaac 18991255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 4428602 - 4428655
Alignment:
Q  115 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaa 168  Q
    ||||||||||||||||||||| | ||| ||||| ||||||||||| ||||||||    
T  4428602 aaagatgacacaattccctttagtaacagacaactcagaagcagaggcagaaaa 4428655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 211
Target Start/End: Original strand, 4439831 - 4439927
Alignment:
Q  115 aaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactc 211  Q
    ||||||||||||||||||||| | |||  ||||||| |||||||| |||||||| |||||  ||  ||| || ||||||||  ||||||| ||||||    
T  4439831 aaagatgacacaattccctttagaaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatctcccaaactc 4439927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 268
Target Start/End: Original strand, 246841 - 246991
Alignment:
Q  118 gatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacag-tcagcccctaagaacaaaacaatatctcctaaactctttaa 216  Q
    |||||||||||||||||||  |||  |||||||  ||||||| |||||||| || |||  || |||| |||||||||||  ||||||||||| |    ||    
T  246841 gatgacacaattccctttgtgaacacacaaatccaaagcagaagcagaaaatgaccagaacaacccc-aagaacaaaactgtatctcctaaattagccaa 246939  T
Q  217 cttcacccactccgtctccttctcattaagcttaaacaaatgaatccttaca 268  Q
    ||||||||| | | ||||| |  |||||||||||||||| | ||||||||||    
T  246940 cttcacccatttcttctcccttgcattaagcttaaacaagtcaatccttaca 246991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 269
Target Start/End: Complemental strand, 450221 - 450102
Alignment:
Q  150 cagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaacttcacccactccgtctccttctcattaagctt 249  Q
    |||||||||| |||||||||||| |   | | |||||||||||||   ||||||||||| || | ||||| |||||||   |||||||||||| |||| |    
T  450221 cagaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcctcaacttgacccactttttctccttctcatcaagcct 450122  T
Q  250 aaacaaatgaatccttacag 269  Q
    ||||| || ||||| |||||    
T  450121 aaacacatcaatccatacag 450102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 3695660 - 3695720
Alignment:
Q  114 aaaagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaaca 174  Q
    ||||||| |||||||||||||||||| | |||||||| ||||||   |||||||| |||||    
T  3695660 aaaagatcacacaattccctttggcagcagacaaatccgaagcaatagcagaaaatgaaca 3695720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 225
Target Start/End: Complemental strand, 44688929 - 44688820
Alignment:
Q  116 aagatgacacaattccctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactcttta 215  Q
    ||||| |||||||||||||||||||  |||||||| |||||||  | |||||| ||| | |||  ||| ||||||||||   |||  ||||||||| |||    
T  44688929 aagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgtta 44688830  T
Q  216 acttcaccca 225  Q
    |||| |||||    
T  44688829 actttaccca 44688820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University