View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10707_high_16 (Length: 338)
Name: NF10707_high_16
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_high_16 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 338
Target Start/End: Original strand, 7387534 - 7387854
Alignment:
| Q |
18 |
aacttcacattaatgtattaggtctcacctaattatttattaaataaatgacactcttactatcacaatgtaattgaactccaacttgctcaacacccaa |
117 |
Q |
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| T |
7387534 |
aacttcacatgaatgtattaggtctcacctgattatttattaaataaatgacactcgtactacgacaatgtaattgaactccaacttgctcaacacccag |
7387633 |
T |
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| Q |
118 |
tcccctctctaatcatgtaaaatgtaagatctctttgacaaccttaattactactatgtactactcttcaatttcagacattgccactatgaattgatca |
217 |
Q |
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| T |
7387634 |
ttccctctctaatcatgtaaactgtaagacctctttgacaaccttaactactgctatgtactactcttcaatttcagacattgccactatgaattgacca |
7387733 |
T |
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| Q |
218 |
aatgattttcaacaaatagatcctttagcatatcacaagcatagtctgaatcaatatatcatacaacagaaggatcattttgtccacttaaatatgatac |
317 |
Q |
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| T |
7387734 |
aatgattttcaacaaatagatcctttagcatatcacaagcatagtctgaatcaatatatcctacaacagaaggatcattttgtccacttaaatatgatac |
7387833 |
T |
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| Q |
318 |
aatgactgttgtcagaggcag |
338 |
Q |
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| T |
7387834 |
aatgactgttgtcagaggcag |
7387854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 32985493 - 32985434
Alignment:
| Q |
59 |
aaataaatgacactcttactatcacaatgtaattgaactccaacttgctcaacacccaat |
118 |
Q |
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| T |
32985493 |
aaataaatgacactctgactatcacaatgcaaccagactccaccttgctcaacacccaat |
32985434 |
T |
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