View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10707_high_2 (Length: 571)
Name: NF10707_high_2
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_high_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 16 - 571
Target Start/End: Original strand, 54219853 - 54220405
Alignment:
| Q |
16 |
cactttctcaatccagaaggtccacggcgtttcttatctcatccttgcctttcaccttcgtttttctctctccgccaccaccagcggaggctagagaaag |
115 |
Q |
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| T |
54219853 |
cactttctcaatccagaaggtccacggcgattcttatctcatccttgcctttcaccttcgtttttctctctccgccaccaccagcggaggctagagaaag |
54219952 |
T |
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| Q |
116 |
acgcaagaaaaagaacattcccattgatgattatatcacttcccgtatttccttctttactcaacattcacatttgctgttaaactatcttctatatcaa |
215 |
Q |
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| T |
54219953 |
acgcaagaaaaagaacattcccattgatgattatatcacttcccgtatttccttctttactcaacattcacattttctgttaaactatcttcaatatcaa |
54220052 |
T |
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| Q |
216 |
attattttctattttcacttttcttctgctctgtataaactaattcagaaacttgtgatgtttgattcagctgatggattaaaatactatgattttcttg |
315 |
Q |
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| T |
54220053 |
attattttctattttcacttttcttctgctctgtataaactaattcagaaacttgtgatgtttgattcagctgatggattaaaatactatgattttcttg |
54220152 |
T |
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| Q |
316 |
agggaaaaggtccaatagctgaaaaaggatcaactgttcaggtttgtcatcttttggaaattaaaggaaaatatgttattcatttcttctggatttgtta |
415 |
Q |
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| T |
54220153 |
agggaaaaggtccaatagctgaaaaaggatcaactgttcaggtttgtcatcttttggaaattaaaggaaaatatgttattcatttcttctggatttgtta |
54220252 |
T |
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| Q |
416 |
ttatttactcttcatttcatattgttcttgttgacaggtgcactttgattgtttatatcgcggaattacagctgtttcaagtcgagaatctaaactccta |
515 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54220253 |
ttatttactcttcatttca---tgttcttgttgacaggtgcactttgattgtttatatcgcggaattacagctgtttcaagtcgagaatctaaactccta |
54220349 |
T |
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| Q |
516 |
gctgtaaatcgtgttatagcccaggttccaataatttgcctatttggtttttctgt |
571 |
Q |
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| T |
54220350 |
gctggaaatcgtgttatagcccaggttccaataatttgcctatttggtttttctgt |
54220405 |
T |
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