View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10707_high_27 (Length: 264)
Name: NF10707_high_27
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_high_27 |
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Alignment Details
Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 13825416 - 13825350
Alignment:
| Q |
181 |
agatatacttttttaccttaactagagcgtgcatttacaccaaccattaacgcacttaaatgcaatt |
247 |
Q |
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| T |
13825416 |
agatatacttttttaccttaactagagcgtgcatttacaccaaccattaacgcacttaaatgcaatt |
13825350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 33096213 - 33096270
Alignment:
| Q |
1 |
caccttgtgcttgaggatcctttcgtgtttctaatacattcaatttttgcttgttaaa |
58 |
Q |
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| T |
33096213 |
caccttgtgcttgaggatccttttgtgtttctaatatattccatttttgcttgttaaa |
33096270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 13836806 - 13836861
Alignment:
| Q |
190 |
tttttaccttaactagagcgtgcatttacaccaaccattaacgcacttaaatgcaa |
245 |
Q |
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| T |
13836806 |
tttttaccttaactagagtatgcatttgcaccaaccattaatgcacttaaatgcaa |
13836861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 13825449 - 13825416
Alignment:
| Q |
102 |
gttagagagaaattataagtgtaataactaataa |
135 |
Q |
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| T |
13825449 |
gttagagagaaattataagtgtaataactaataa |
13825416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 21495930 - 21495876
Alignment:
| Q |
1 |
caccttgtgcttgaggatcctttcgtgtttctaatacattcaatttttgcttgtt |
55 |
Q |
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| T |
21495930 |
caccttgtgcttaaggatccttttgtgtttctaatatattccatttttgcttgtt |
21495876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 48804595 - 48804543
Alignment:
| Q |
3 |
ccttgtgcttgaggatcctttcgtgtttctaatacattcaatttttgcttgtt |
55 |
Q |
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| T |
48804595 |
ccttgtgcttgaggatccttttgtgtttctaaaatattccatttttccttgtt |
48804543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 9599435 - 9599380
Alignment:
| Q |
1 |
caccttgtgcttgaggatcctttcgtgtttctaata-cattcaatttttgcttgtt |
55 |
Q |
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| T |
9599435 |
caccttgtgcttgaggatccttctgtgtttctaatataattccatttttgcttgtt |
9599380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 9827006 - 9826951
Alignment:
| Q |
1 |
caccttgtgcttgaggatcctttcgtgtttctaata-cattcaatttttgcttgtt |
55 |
Q |
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| T |
9827006 |
caccttgtgcttgaggatccttctgtgtttctaatataattccatttttgcttgtt |
9826951 |
T |
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