View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10707_high_34 (Length: 250)
Name: NF10707_high_34
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_high_34 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 36949885 - 36949649
Alignment:
| Q |
1 |
caccatataatcttgaatcagctgctttaagaagatcaccattaccatatagttcgcaaacccaatccaccaagtaaatatgttcttcactaagacttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36949885 |
caccatataatcttgaatcagctgctttaagaagatcaccattaccatatagttcgcaaacccaatccaccaagtaaatatgttcttcactaagacttgg |
36949786 |
T |
|
| Q |
101 |
ttcaattgcctttctaccacaagctatttccaaagcaacaactccaaaactgtatacatcagattctctactagcctttcctcttgtagcagcttcaggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36949785 |
ttcaattgcctttctaccacaagctatttccaaagcaacaactccaaaactgtatacatcagattctctactagcctttcctcttgtagcagcttcaggt |
36949686 |
T |
|
| Q |
201 |
gatagatatccatatgttcctgctaaaacagttgtct |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36949685 |
gatagatatccatatgttcctgctaaaacagttgtct |
36949649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 36960019 - 36959783
Alignment:
| Q |
1 |
caccatataatcttgaatcagctgctttaagaagatcaccattaccatatagttcgcaaacccaatccaccaagtaaatatgttcttcactaagacttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36960019 |
caccatataatcttgaatcagctgctttaagaagatcaccattaccatatagttcgcaaacccaatccaccaagtaaatatgttcttcactaagacttgg |
36959920 |
T |
|
| Q |
101 |
ttcaattgcctttctaccacaagctatttccaaagcaacaactccaaaactgtatacatcagattctctactagcctttcctcttgtagcagcttcaggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36959919 |
ttcaattgcctttctaccacaagctatttccaaagcaacaactccaaaactgtatacatcagattctctactagcctttcctcttgtagcagcttcaggt |
36959820 |
T |
|
| Q |
201 |
gatagatatccatatgttcctgctaaaacagttgtct |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36959819 |
gatagatatccatatgttcctgctaaaacagttgtct |
36959783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 36941572 - 36941652
Alignment:
| Q |
111 |
tttctaccacaagctatttccaaagcaacaactccaaaactgtatacatcagattctctactagcctttcctcttgtagca |
191 |
Q |
| |
|
||||| ||||||||||| || |||||||||| ||||||||| || ||||| | |||| |||| ||| ||||| | |||||| |
|
|
| T |
36941572 |
tttcttccacaagctatctctaaagcaacaattccaaaactatacacatcggtttctttactggcccttcctgtggtagca |
36941652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University