View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10707_high_42 (Length: 241)

Name: NF10707_high_42
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10707_high_42
NF10707_high_42
[»] chr6 (6 HSPs)
chr6 (13-222)||(2062335-2062544)
chr6 (13-220)||(2057911-2058118)
chr6 (13-222)||(2053798-2054007)
chr6 (81-205)||(2047259-2047383)
chr6 (124-220)||(2041716-2041812)
chr6 (124-172)||(2088190-2088238)


Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 2062544 - 2062335
Alignment:
Q  13 aagaaacataacagtcaactactatattttataaatcaacattataaagtaaaaacgtattgagctactgcataaatttgatgccagtctcccatcttcc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2062544 aagaaacataacagtcaactactatattttataaatcaacattataaagtaaaaacgtattgagctactgcataaatttgataccagtctcccatcttcc 2062445  T
Q  113 gcatacagaacagctcctgcaccagctggtcctggatttccacttaatgcaccatcaaaccgaacgatacacaaaccctgcaaataagatatagaacttt 212  Q
    |||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2062444 gcatacagaacagctcctgcaccagctggtccaggatttccacctgatgcaccatcaaaccgaacgatacacaaaccctgcaaataagatatagaacttt 2062345  T
Q  213 ggagttaata 222  Q
    ||||||||||    
T  2062344 ggagttaata 2062335  T

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Target: chr6; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 2058118 - 2057911
Alignment:
Q  13 aagaaacataacagtcaactactatattttataaatcaacattataaagtaaaaacgtattgagctactgcataaatttgatgccagtctcccatcttcc 112  Q
    ||||||||||||||||| |||||||||||||||||||| || |||||| |||||||  |||||  |  |||||| | ||||| ||   | ||||||||||    
T  2058118 aagaaacataacagtcagctactatattttataaatcaccaatataaaataaaaaccaattgaattgttgcatatagttgataccttccgcccatcttcc 2058019  T
Q  113 gcatacagaacagctcctgcaccagctggtcctggatttccacttaatgcaccatcaaaccgaacgatacacaaaccctgcaaataagatatagaacttt 212  Q
    ||| ||| |||| ||||||| ||||||||||| |||||||||||  || ||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  2058018 gcaaacataacaactcctgccccagctggtccaggatttccactcgatacaccaccaaaccgaacgatacacaaaccctgcaaataagatatagcacttt 2057919  T
Q  213 ggagttaa 220  Q
    | ||||||    
T  2057918 gaagttaa 2057911  T

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Target: chr6; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 2054007 - 2053798
Alignment:
Q  13 aagaaacataacagtcaactactatattttataaatcaacattataaagtaaaaacgtattgagctactgcataaatttgatgccagtctcccatcttcc 112  Q
    |||||||||| | |||| |||| |||||||||||||||| | |||||| | |||||  ||||| ||  || ||||||||||| || ||||||||||||||    
T  2054007 aagaaacatatcggtcagctacaatattttataaatcaaaaatataaaattaaaaccaattgaactgttgaataaatttgataccggtctcccatcttcc 2053908  T
Q  113 gcatacagaacagctcctgcaccagctggtcctggatttccacttaatgcaccatcaaaccgaacgatacacaaaccctgcaaataagatatagaacttt 212  Q
    |||||||||| ||||||||||||||||||||| ||||||||| |  ||||||||||||||   | ||||||  ||| || |||||||| |||| ||||||    
T  2053907 gcatacagaatagctcctgcaccagctggtccaggatttccaatcgatgcaccatcaaactcgaggatacaagaacgctacaaataaggtataaaacttt 2053808  T
Q  213 ggagttaata 222  Q
     |||||||||    
T  2053807 agagttaata 2053798  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 81 - 205
Target Start/End: Complemental strand, 2047383 - 2047259
Alignment:
Q  81 tgcataaatttgatgccagtctcccatcttccgcatacagaacagctcctgcaccagctggtcctggatttccacttaatgcaccatcaaaccgaacgat 180  Q
    |||| |||||| || |||| | || ||||||  |||| || ||||||||||||||||||||||| ||||| |||||| ||||||||||||||  || | |    
T  2047383 tgcaaaaatttaataccagacaccaatcttcatcatatagtacagctcctgcaccagctggtcccggattcccacttgatgcaccatcaaacataaggtt 2047284  T
Q  181 acacaaaccctgcaaataagatata 205  Q
    ||| |||| ||||||||||| ||||    
T  2047283 acaaaaacgctgcaaataaggtata 2047259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 220
Target Start/End: Complemental strand, 2041812 - 2041716
Alignment:
Q  124 agctcctgcaccagctggtcctggatttccacttaatgcaccatcaaaccgaacgatacacaaaccctgcaaataagatatagaactttggagttaa 220  Q
    ||||| ||||||||||| ||| |||||||||||| | |||||||||||  ||| ||||||  ||| ||||||||||||| || || |||||||||||    
T  2041812 agctcttgcaccagctgatccaggatttccacttgacgcaccatcaaattgaaggatacaagaactctgcaaataagatttaaaattttggagttaa 2041716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 2088238 - 2088190
Alignment:
Q  124 agctcctgcaccagctggtcctggatttccacttaatgcaccatcaaac 172  Q
    ||||||||||||||||||||| ||||||||||   |||| |||||||||    
T  2088238 agctcctgcaccagctggtccgggatttccacgcgatgcgccatcaaac 2088190  T

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