View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10707_high_43 (Length: 241)
Name: NF10707_high_43
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_high_43 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 36950142 - 36949905
Alignment:
| Q |
1 |
ccctgtgatagtgctatcacttgaagttgaggtcccagtttggttattttcaaaaccagaaatcttagatttagaatacacagaattgaaagatgtatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36950142 |
ccctgtgatagtgctatcacttgaagttgaggtcccagtttggttattttcaaaaccagaaatcttagatttagaatacacagaattgaaagatgtatta |
36950043 |
T |
|
| Q |
101 |
taggtagatgcattcatctgtaatggaagattaggtaatggagcatcaaagttaagcacttgaacaacttgcctaatcacaggcctctgaagatgatctg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36950042 |
taggtagatgcattcatctgtaatggaagattaggtaatggagcatcaaagttaagcacttgaacaacttgcctaatcataggcctctgaagatgatctg |
36949943 |
T |
|
| Q |
201 |
tatgagtacaccaaagtccaactatcattaacctctct |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36949942 |
tatgagtacaccaaagtccaactatcattaacctctct |
36949905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 36960276 - 36960039
Alignment:
| Q |
1 |
ccctgtgatagtgctatcacttgaagttgaggtcccagtttggttattttcaaaaccagaaatcttagatttagaatacacagaattgaaagatgtatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36960276 |
ccctgtgatagtgctatcacttgaagttgaggtcccagtttggttattttcaaaaccagaaatcttagatttagaatacacagaattgaaagatgtatta |
36960177 |
T |
|
| Q |
101 |
taggtagatgcattcatctgtaatggaagattaggtaatggagcatcaaagttaagcacttgaacaacttgcctaatcacaggcctctgaagatgatctg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36960176 |
taggtagatgcattcatctgtaatggaagattaggtaatggagcatcaaagttaagcacttgaacaacttgcctaatcataggcctctgaagatgatctg |
36960077 |
T |
|
| Q |
201 |
tatgagtacaccaaagtccaactatcattaacctctct |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36960076 |
tatgagtacaccaaagtccaactatcattaacctctct |
36960039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University