View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10707_high_5 (Length: 438)

Name: NF10707_high_5
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10707_high_5
NF10707_high_5
[»] chr1 (5 HSPs)
chr1 (336-430)||(50589572-50589666)
chr1 (78-180)||(50589807-50589909)
chr1 (7-73)||(50590242-50590308)
chr1 (78-172)||(19598093-19598188)
chr1 (362-430)||(19598301-19598369)
[»] chr2 (6 HSPs)
chr2 (336-430)||(16959649-16959744)
chr2 (362-421)||(2062559-2062618)
chr2 (102-149)||(16959470-16959517)
chr2 (103-177)||(22885894-22885968)
chr2 (122-176)||(27739348-27739402)
chr2 (9-73)||(16959050-16959114)
[»] chr4 (7 HSPs)
chr4 (126-172)||(28966393-28966439)
chr4 (103-178)||(12295595-12295670)
chr4 (362-420)||(38929490-38929548)
chr4 (111-180)||(46699334-46699403)
chr4 (136-180)||(8254531-8254575)
chr4 (136-180)||(8267949-8267993)
chr4 (362-429)||(28966533-28966600)
[»] chr5 (2 HSPs)
chr5 (343-419)||(22675678-22675754)
chr5 (126-180)||(27712604-27712658)


Alignment Details
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 336 - 430
Target Start/End: Complemental strand, 50589666 - 50589572
Alignment:
Q  336 ggattcagaaaaggagtggttagggatgcttaggtgaggaggtggatgctttgtgggggtttgttgtgggtgattccttttggaggccgtctctg 430  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50589666 ggattcataaaaggagtggttagggatgcttaggtgaggaggtggatgctttgtgggggtttgttgtgggtgattccttttggaggccgcctctg 50589572  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 78 - 180
Target Start/End: Complemental strand, 50589909 - 50589807
Alignment:
Q  78 ttgtgagtatatccgctgtgattttttcttcaaaatgctatagtgatgttgctactttccttgaagactatcaacctcgttgtcttgctcttgtgcttgc 177  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  50589909 ttgtgagtatatccactgtgattttttcttcgaaatgctatagtgatgttgctgctttccttgaagactatcaaccttgttgtcttgctcttgtgcttgc 50589810  T
Q  178 tga 180  Q
    |||    
T  50589809 tga 50589807  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 50590308 - 50590242
Alignment:
Q  7 gcaacttggacgcaatattgttgtggtaccttaaaagtttctgtttcatctgcgtgatcttgagtcg 73  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  50590308 gcaacttggacgcaatattgttgtggtaccttaaaagtttttgtttcatctgcgtgatcttgagtcg 50590242  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 19598093 - 19598188
Alignment:
Q  78 ttgtgagtatatccgctgtgattttttcttcaaaatgctatagtgatgtt-gctactttccttgaagactatcaacctcgttgtcttgctcttgtg 172  Q
    |||||||||||| |  |||| ||  ||||||| |||||||| |||||||| ||| ||||||||| ||||  | |||||||||||||||||||||||    
T  19598093 ttgtgagtatattctttgtggttgattcttcagaatgctatggtgatgtttgctgctttccttggagacattaaacctcgttgtcttgctcttgtg 19598188  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 430
Target Start/End: Original strand, 19598301 - 19598369
Alignment:
Q  362 tgcttaggtgaggaggtggatgct-ttgtgggggtttgttgtgggtgattccttttggaggccgtctctg 430  Q
    |||||||||||| ||| || |||| |||||| |||| ||||||||||||||||||||||| ||| |||||    
T  19598301 tgcttaggtgagaaggagggtgctattgtggcggtt-gttgtgggtgattccttttggagaccgcctctg 19598369  T

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Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 336 - 430
Target Start/End: Original strand, 16959649 - 16959744
Alignment:
Q  336 ggattcagaaaa-ggagtggttagggatgcttaggtgaggaggtggatgctttgtgggggtttgttgtgggtgattccttttggaggccgtctctg 430  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||    
T  16959649 ggattcagaaaaaggagtggttagggatgcttaggttaggaggtgggtgctttgtggggatttgttgtgggtgattccttttggaggccgcctctg 16959744  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 421
Target Start/End: Original strand, 2062559 - 2062618
Alignment:
Q  362 tgcttaggtgaggaggtggatgcttt-gtgggggtttgttgtgggtgattccttttggagg 421  Q
    ||||||||||||||||||| |||||| |||| |||| ||||||||||||||||||||||||    
T  2062559 tgcttaggtgaggaggtgggtgcttttgtggtggtt-gttgtgggtgattccttttggagg 2062618  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 16959470 - 16959517
Alignment:
Q  102 tttcttcaaaatgctatagtgatgttgctactttccttgaagactatc 149  Q
    ||||||||||||||||| | ||||||| | ||||||||||||||||||    
T  16959470 tttcttcaaaatgctatggggatgttgttgctttccttgaagactatc 16959517  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 22885968 - 22885894
Alignment:
Q  103 ttcttcaaaatgctatagtgatgttgctactttccttgaagactatcaacctcgttgtcttgctcttgtgcttgc 177  Q
    |||||| ||||||||  | |||||| || ||||||||  ||||| |||| || ||||||||||||||||||||||    
T  22885968 ttcttcgaaatgctaaggcgatgttcctgctttccttagagactttcaatcttgttgtcttgctcttgtgcttgc 22885894  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 27739348 - 27739402
Alignment:
Q  122 gatgttgctactttccttgaagactatcaacctcgttgtcttgctcttgtgcttg 176  Q
    ||||||||| ||||||||| ||||| | | ||| |||||||||||||||||||||    
T  27739348 gatgttgctgctttccttggagactttaagccttgttgtcttgctcttgtgcttg 27739402  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 16959050 - 16959114
Alignment:
Q  9 aacttggacgcaatattgttgtggtaccttaaaagtttctgtttcatctgcgtgatcttgagtcg 73  Q
    ||||||||  |||||||||| | || |||||||| |||  ||||||||||| |||||||||||||    
T  16959050 aacttggagacaatattgttattgttccttaaaaatttacgtttcatctgcatgatcttgagtcg 16959114  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 28966393 - 28966439
Alignment:
Q  126 ttgctactttccttgaagactatcaacctcgttgtcttgctcttgtg 172  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||    
T  28966393 ttgctactttccttggagactttcaacctcgttgtcttgctcttgtg 28966439  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 178
Target Start/End: Original strand, 12295595 - 12295670
Alignment:
Q  103 ttcttcaaaatgctatagtgatgttgctactttccttgaagactatcaacctcgttgtcttgctcttgtgcttgct 178  Q
    ||||||| |||||||| |||||||| || |||| |||| ||||| | | ||||| |||||||||||||||||||||    
T  12295595 ttcttcagaatgctatggtgatgttactgcttttcttggagacttttagcctcgctgtcttgctcttgtgcttgct 12295670  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 420
Target Start/End: Original strand, 38929490 - 38929548
Alignment:
Q  362 tgcttaggtgaggaggtggatgctttgtgggggtttgttgtgggtgattccttttggag 420  Q
    |||||| |||||||||||||||||||   || | |||||||||||||||||||||||||    
T  38929490 tgcttaagtgaggaggtggatgcttttatggtggttgttgtgggtgattccttttggag 38929548  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 46699403 - 46699334
Alignment:
Q  111 aatgctatagtgatgttgctactttccttgaagactatcaacctcgttgtcttgctcttgtgcttgctga 180  Q
    |||| ||| ||||||||||| ||||||||  ||||| ||| ||||| | |||||||||||||||||||||    
T  46699403 aatgttatggtgatgttgctgctttccttcgagactttcagcctcgctatcttgctcttgtgcttgctga 46699334  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 8254531 - 8254575
Alignment:
Q  136 ccttgaagactatcaacctcgttgtcttgctcttgtgcttgctga 180  Q
    ||||| |||||||||||||| ||||||||||||||| | ||||||    
T  8254531 ccttggagactatcaacctcattgtcttgctcttgttcctgctga 8254575  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 8267949 - 8267993
Alignment:
Q  136 ccttgaagactatcaacctcgttgtcttgctcttgtgcttgctga 180  Q
    ||||| |||||||||||||| ||||||||||||||| | ||||||    
T  8267949 ccttggagactatcaacctcattgtcttgctcttgttcctgctga 8267993  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 429
Target Start/End: Original strand, 28966533 - 28966600
Alignment:
Q  362 tgcttaggtgaggaggtggatgcttt-gtgggggtttgttgtgggtgattccttttggaggccgtctct 429  Q
    |||||||||| |||||||  |||||| |||| |||| ||||||||||||||||||||||| ||| ||||    
T  28966533 tgcttaggtggggaggtgtgtgcttttgtggcggtt-gttgtgggtgattccttttggagaccgcctct 28966600  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 419
Target Start/End: Complemental strand, 22675754 - 22675678
Alignment:
Q  343 gaaaaggagtggttagggatgcttaggtgaggaggtggatgc-tttgtgggggtttgttgtgggtgattccttttgga 419  Q
    ||||||| |||||| | | ||||||||||||||||||| ||| ||||||| || ||||||||||||| ||||||||||    
T  22675754 gaaaaggggtggttggtgttgcttaggtgaggaggtgggtgcttttgtggcgg-ttgttgtgggtgactccttttgga 22675678  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 27712604 - 27712658
Alignment:
Q  126 ttgctactttccttgaagactatcaacctcgttgtcttgctcttgtgcttgctga 180  Q
    ||||| ||||||||  ||||| ||||||||||||| |||||||||||| ||||||    
T  27712604 ttgcttctttccttagagactttcaacctcgttgtattgctcttgtgcctgctga 27712658  T

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