View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10707_high_6 (Length: 421)
Name: NF10707_high_6
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_high_6 |
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| [»] scaffold0024 (1 HSPs) |
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| [»] scaffold0002 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 31 - 327
Target Start/End: Original strand, 6956478 - 6956768
Alignment:
| Q |
31 |
aggaaaaataaactagggtaaatctgataccatattgatgttaccaagccaaaagagaaaagttaatgaatagaaatatatgaaaattgtattaatatga |
130 |
Q |
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| T |
6956478 |
aggaaaaataaactagggtaactctgataccatattgatgttaccaaaccaaaagagaaaagttaatgaatagaaatatatgaaaattgtattaatatga |
6956577 |
T |
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| Q |
131 |
tatatgagaagtttgctttctgtacatagagagggagaacaccttctctttatatagtctaactatagagccgttagtaacaatacagactaactcatca |
230 |
Q |
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| T |
6956578 |
tatatgagaagtttgctttctgtacatagagagggagaacaccttctctttatat------aatatagagccgttagtaacaatacagactagctcatca |
6956671 |
T |
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| Q |
231 |
taataactacaattaattacatattaaactaatttgaccaagtaacaatcaattacaattaattacacatttggtcaagtaatatcagtaggtaata |
327 |
Q |
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| T |
6956672 |
caataactacaattaattacatattaaactaatttgaccaaataacaatcaatttcaattaattacacatttgttcaagtaatatcaggaggtaata |
6956768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 62 - 327
Target Start/End: Complemental strand, 14421 - 14152
Alignment:
| Q |
62 |
atattgatgttaccaagccaaaagagaaaagttaatgaatagaaatatatgaaaattgtattaatatgatatatgagaagtttgctttctgtacata--- |
158 |
Q |
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| T |
14421 |
atattgatgttaccaagccaaaagagaaaagttaatgaatagaaatatatgaaaattgtattaatatgatatatgagaagtttgctttctgtacatatat |
14322 |
T |
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| Q |
159 |
-gagagggagaacaccttctctttatatagtctaactatagagccgttagtaacaatacagactaactcatcataataactacaattaattacatattaa |
257 |
Q |
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| T |
14321 |
agagaaggagaacaccttctctttatatagtctaactatagagccgttagtaacaatacagattagctcatcacaataactacaattaattacatattaa |
14222 |
T |
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| Q |
258 |
actaatttgaccaagtaacaatcaattacaattaattacacatttggtcaagtaatatcagtaggtaata |
327 |
Q |
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| T |
14221 |
attaatttgaccaagtaacaatcaattacaattaattacacatttggtcaagtaatatcagtaggtaata |
14152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 79; Significance: 8e-37; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 410478 - 410400
Alignment:
| Q |
328 |
ataactattcattaatgaatttgtaaattgtagcctttgtataatgatattattaatgacaaaattataagtagatttt |
406 |
Q |
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| T |
410478 |
ataactattcattaatgaatttgtaaattgtagcctttgtataatgatattattaatgacaaaattataagtagatttt |
410400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 386
Target Start/End: Complemental strand, 422199 - 422149
Alignment:
| Q |
336 |
tcattaatgaatttgtaaattgtagcctttgtataatgatattattaatga |
386 |
Q |
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| T |
422199 |
tcattaattaatttgtaaattgtagcctttgtatattgatattattaatga |
422149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 386
Target Start/End: Complemental strand, 425933 - 425883
Alignment:
| Q |
336 |
tcattaatgaatttgtaaattgtagcctttgtataatgatattattaatga |
386 |
Q |
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| T |
425933 |
tcattaatgaatttgtaaattgtagcctttgaatattgatattattaatga |
425883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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