View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10707_high_60 (Length: 206)
Name: NF10707_high_60
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_high_60 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 7 - 191
Target Start/End: Complemental strand, 6608547 - 6608363
Alignment:
| Q |
7 |
ggtgacagtacaactgcttcgttggttaactattatagcaagtggcctattctgtttttcagagattttgcgatttctgttgagaaaatgggtcgcattg |
106 |
Q |
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| T |
6608547 |
ggtgacagcacaactgcttcattggttaactattatagcaagtggcctattctgtttttcagagattttgcggtttctgttgagaaaatgggccgcattg |
6608448 |
T |
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| Q |
107 |
gtgttctgacgggacaacagggtcaaataaggaaaaattgtagggttgttaactagatatatgatctgcatttgtattttctctt |
191 |
Q |
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| T |
6608447 |
gtgttttgacgggacaacagggtcaaataaggaaaaattgtagggttgttaactagatatatgatctgcatttgtattttctctt |
6608363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 7 - 161
Target Start/End: Complemental strand, 6601134 - 6600980
Alignment:
| Q |
7 |
ggtgacagtacaactgcttcgttggttaactattatagcaagtggcctattctgtttttcagagattttgcgatttctgttgagaaaatgggtcgcattg |
106 |
Q |
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| T |
6601134 |
ggtgacaatacaacttctgcattggttaccaactatagcaagtggcctattctgtttttcagagattttgcggtttctgttgagaaaatgggtcgcattg |
6601035 |
T |
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| Q |
107 |
gtgttctgacgggacaacagggtcaaataaggaaaaattgtagggttgttaacta |
161 |
Q |
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| T |
6601034 |
gtattcttgcgggacagcagggtcaaataaggaaaaattgtagggctgttaacta |
6600980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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