View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10707_high_9 (Length: 388)
Name: NF10707_high_9
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 51335451 - 51335080
Alignment:
| Q |
1 |
aacatgggtgtaatcaaatgcttaactgccacaagacacgtagaattaaggaaacaacatagtaggcttaatattggagctcaaggaaggaatgtttgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51335451 |
aacatgggtgtaatcaaatgcttaactgccacaagacacgtagaattaaggaaacaacatagtaggcttaatattggagctcaaggaaggaatgtttgta |
51335352 |
T |
|
| Q |
101 |
tttgcatgataatcataattaaggtgtaaaatgcacaaagggagagaaagatttcaacaagtggcctttattgggtttcataaaatacaaaggtgaaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51335351 |
tttgcatgataatcataattaaggtgtaaaatgcacaaagggagagaaagatttcaacaagtggcctttattgggtttcataaaatacaaaggtgaaaac |
51335252 |
T |
|
| Q |
201 |
caattaggtgtggaaataagacattgtaggtcacttaggggaacatattaattaatgttaattaggtttatctttagggccaacacaaaggtgtaactat |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51335251 |
caattaggtgtggaaattagacattgtaggtcacttaggggaacatattaattaatgttaattaggtttatctttagggccaacacaaaggtgtaactat |
51335152 |
T |
|
| Q |
301 |
tggggctcaatgcacgatgcccacctcttcctttgacatgcccacctcttattcccttataatgtcttcttg |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51335151 |
tggggctcaatgcacgatgcccacctcttcctttgacatgcccacctcttattcccttataatgtcttcttg |
51335080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University