View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10707_low_11 (Length: 404)
Name: NF10707_low_11
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 400
Target Start/End: Complemental strand, 17585116 - 17584733
Alignment:
| Q |
19 |
attgtatcagccatcagctatgcctgccagccnnnnnnnnnnnnnnnnttaatgagacaaatcatgattggtaaatgggcaatacaagagtcggggatcg |
118 |
Q |
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| T |
17585116 |
attgtatcagccatcagctatgcctgccagccaaaaataaaaacaaaattaatgagacaaatcatgattggtaaatgggcaatacaagagtcggggatcg |
17585017 |
T |
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| Q |
119 |
gatggaattcatgaagttttaggagacacacttagcttctaatctctttctaaaaacaaagcaaaaatatggatttctaga--atatgttgtacatgttt |
216 |
Q |
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| T |
17585016 |
gatggaattcatgaagttttaggagacacacttagcttctaatctctttttaaaaacaaagcaaaaatatggatttctagaatatatgttgtacatgttt |
17584917 |
T |
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| Q |
217 |
tgacaatccagaatttctcaaaagtaatcaatagttgctctactcaatcgcttcaccgtaatatccaacccaaggactctaaaattcttttagacatggt |
316 |
Q |
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| T |
17584916 |
tgacaatccagaatttctcaaaagtaatcaatagttgctctactcaattgcttcaccgtaatatccaacccaaggactctaaaattcttttagacatggt |
17584817 |
T |
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| Q |
317 |
tacagataattgaaaatttagggtggtggttcctacttcaatgcggcacattcaacgtcttttggctttatattggcatgttca |
400 |
Q |
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| T |
17584816 |
tacagataattgaaaatttagggtggtggttcctacttcaatgcggcacattcaacatcttttggctttatattggcatgttca |
17584733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 67 - 322
Target Start/End: Original strand, 14741128 - 14741386
Alignment:
| Q |
67 |
ttaatgagacaaatcatgattggtaaatgggcaatacaagagtcggggatcggatggaattcatgaagttttaggagacacacttagcttctaatctctt |
166 |
Q |
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| T |
14741128 |
ttaatgagacaaatcatgattggtaaatgggcaatacaagagtcggggatcggatggaattcatgaagttttaggagacacacttagcttctaatctctt |
14741227 |
T |
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| Q |
167 |
tctaaaaacaaagcaaaaatatggatttctaga--atatgttg-tacatgttttgacaatccagaatttctcaaaagtaatcaatagttgctctactcaa |
263 |
Q |
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| T |
14741228 |
tttaaaaacaaagcaaaaatatggatttctagaatatatgttgttacatgttttgacaatccagaatttctcaaaagtaatcaatagttgctctactcaa |
14741327 |
T |
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| Q |
264 |
tcgcttcaccgtaatatccaacccaaggactctaaaattcttttagacatggttacaga |
322 |
Q |
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| T |
14741328 |
tcgcttcaccgtaatatccaactcaaggactctaaaattcttttagacatggttacaga |
14741386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 313 - 400
Target Start/End: Original strand, 14742262 - 14742349
Alignment:
| Q |
313 |
tggttacagataattgaaaatttagggtggtggttcctacttcaatgcggcacattcaacgtcttttggctttatattggcatgttca |
400 |
Q |
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| T |
14742262 |
tggttacagataattgaaaatttagggtggtggttcctacttcaatgcggcacattcaatgtcttttggctttatattggcatgttca |
14742349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 14741080 - 14741111
Alignment:
| Q |
19 |
attgtatcagccatcagctatgcctgccagcc |
50 |
Q |
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| T |
14741080 |
attgtatcagccatcagctatgcctgccagcc |
14741111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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