View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10707_low_12 (Length: 403)
Name: NF10707_low_12
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 82 - 398
Target Start/End: Complemental strand, 28748387 - 28748082
Alignment:
| Q |
82 |
atagtggcttaccgtggtaatgaagcatataatgccaccagtttcaaaaatcaactaaaagctactgcaaccttagtaactaaaataaactacacattct |
181 |
Q |
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| T |
28748387 |
atagtggcttaccatggtaatgaagcatataatgccaccggtttc----------taaaagctactgcaaccttattaactacaataaactacacattct |
28748298 |
T |
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| Q |
182 |
tgctttatgatggtttnnnnnnnctcctgtaataacagaaaataaaataataacaacacaggtaatgcttacttgttttatctgattacttttcacccaa |
281 |
Q |
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| T |
28748297 |
tgctttatgatggtttaaaaaa-ctcctgtaataacagagaataaaataataacaacacaggtaatgcttacttgttttatctgattacttttcacccaa |
28748199 |
T |
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| Q |
282 |
tcaacaaagacattagagccatctttctcatatgaaccaatgaatccatcaatgcagtcttttttcctgagtgttgcatttggatcattttccagccaga |
381 |
Q |
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| T |
28748198 |
tcaacaaagacattagagccatctttctcatatgaaccaatgaatccatcaatgcagtcttttttcctgagtgttgcatttggatcattttccagccaga |
28748099 |
T |
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| Q |
382 |
ggagatcttcatctcag |
398 |
Q |
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| T |
28748098 |
ggagatcttcatttcag |
28748082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 243 - 316
Target Start/End: Original strand, 3137250 - 3137321
Alignment:
| Q |
243 |
gtaatgcttacttgttttatctgattacttttcacccaatcaacaaagacattagagccatctttctcatatga |
316 |
Q |
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| T |
3137250 |
gtaatgcttgcttgttttatcttattatttttcactgaatcaa--aagacattagagtcatctttctcatatga |
3137321 |
T |
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