View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10707_low_13 (Length: 397)
Name: NF10707_low_13
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 46 - 367
Target Start/End: Complemental strand, 43111415 - 43111095
Alignment:
| Q |
46 |
ggtcaatagtattaattgaacttaaatacgaattagaacgtaggtggaatattcctctagacaatggaagtggatttcatatatggccaactactctaaa |
145 |
Q |
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| T |
43111415 |
ggtcaatagtattaattgaacttaaatacgaattagaacgtaggtggaatattcctctagacaacggaagtggatttcatatatggccaactactctaaa |
43111316 |
T |
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| Q |
146 |
taaattcccctcgaatattcnnnnnnncacacaatctttgccctctattacttgaccaaactaaagttcataaaatccaacggttgtaattcaatttaat |
245 |
Q |
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| T |
43111315 |
taaattcccctcgaatattcttttttt-acacaatctttgccctctattacttgaccaaactaaagttcataaaatccaacggttgtaattcaatttaat |
43111217 |
T |
|
| Q |
246 |
taagaatcaaaaccacaatttgtaatatcccattggaattggaatcaaaacctttgttatttttgagttaggcttcacggtcacaccttgtattgttcac |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43111216 |
taagaatcaaaaccacaatttgtaatatcccattggaattggaatcaaaacctttgttatttttgagttaggcttcacggtcacaccttgtattgttcac |
43111117 |
T |
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| Q |
346 |
tataaataccctttcatctctc |
367 |
Q |
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||||||||||||||||| |||| |
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| T |
43111116 |
tataaataccctttcatttctc |
43111095 |
T |
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