View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10707_low_17 (Length: 376)
Name: NF10707_low_17
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 5 - 360
Target Start/End: Original strand, 19896084 - 19896443
Alignment:
| Q |
5 |
cttatgattatgaccttcatgatggtacgtacaaactcgtctcttcttacttgtgacattaatattaatattgtatgtcttttcttttcactaannnnnn |
104 |
Q |
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| T |
19896084 |
cttattattatgaccctcaagatggtacgtccaaactcgtctcttcttacttgtgacattaatattaatattgcatgtcttt-cttttcactaatttttt |
19896182 |
T |
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| Q |
105 |
nnnn-----atgacaataatatatgtagctgacgcgttccgcttgttagtattggaaaacaaatgggaagaagttatacaaaaatacgaagaagatgtat |
199 |
Q |
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| T |
19896183 |
tttttttttatgacaataatatatgtagctaacgcgttccgcttgatagtattggaagagaaatgggaagaagttataaaaaaatacgaagaacatgtat |
19896282 |
T |
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| Q |
200 |
attttcacaagataaaaataaagggaagaggaacagcattacatgtggcaataagcattgacaacgaagacattgtaaaacgtcttgtagatgtaatagt |
299 |
Q |
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| T |
19896283 |
tttttcacaagataagaataaagggaagaggaacagcattacatgtagcagtgagtaatggcaacgaagacattgtaaaacgtcttgtagatgtaatagt |
19896382 |
T |
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| Q |
300 |
aaagaagcataatgatcaaagtggttttgaaataaagactgaaagaggtgatactcctctt |
360 |
Q |
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| T |
19896383 |
aaagaagcataatgatcaaagtggtttggaaataaagactgaaaaaggtgatactcctctt |
19896443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 120 - 360
Target Start/End: Complemental strand, 20123612 - 20123375
Alignment:
| Q |
120 |
atatgtagctgacgcgttccgcttgttagtattggaaaacaaatgggaagaagttatacaaaaatacgaagaagatgtatattttcacaagataaaaata |
219 |
Q |
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| T |
20123612 |
atatgtagctgccgtgttccgcgagtttgtaatggaagacaaatggaaagaagtgatagataaatacgaagaacatgtatattttcacaagataagaata |
20123513 |
T |
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| Q |
220 |
aagggaagaggaacagcattacatgtggcaataagcattgacaacgaagacattgtaaaacgtcttgtagatgtaatagtaaagaagcataatgatcaaa |
319 |
Q |
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| T |
20123512 |
aagggaagaggaacagcattacatgtggcagtaagcaatgccaacgaagacagtgtaaaacgtcttgtagatgcaatagta---aagcatgatgatcaaa |
20123416 |
T |
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| Q |
320 |
gtggttttgaaataaagactgaaagaggtgatactcctctt |
360 |
Q |
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| T |
20123415 |
gtggttttgaaataaagactgaaagaggtgatactcctctt |
20123375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 120 - 360
Target Start/End: Complemental strand, 20089756 - 20089519
Alignment:
| Q |
120 |
atatgtagctgacgcgttccgcttgttagtattggaaaacaaatgggaagaagttatacaaaaatacgaagaagatgtatattttcacaagataaaaata |
219 |
Q |
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| T |
20089756 |
atatgtagctgccgggttccgcgagtttgtaatggaagacaaatgggaagaagttataaaaaaatacgaagaacatgtattttttcacaggagaagaata |
20089657 |
T |
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| Q |
220 |
aagggaagaggaacagcattacatgtggcaataagcattgacaacgaagacattgtaaaacgtcttgtagatgtaatagtaaagaagcataatgatcaaa |
319 |
Q |
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| T |
20089656 |
aagggaagaggaacagcattacatgtagcagtgagtaatgccaacgaagacattgtaaaacgtcttgtagatgcaatagta---aagcatgatgatcaaa |
20089560 |
T |
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| Q |
320 |
gtggttttgaaataaagactgaaagaggtgatactcctctt |
360 |
Q |
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| T |
20089559 |
gtggttttgaaataaagactgaaagaggtgatactcctctt |
20089519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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