View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10707_low_18 (Length: 367)
Name: NF10707_low_18
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 22 - 330
Target Start/End: Original strand, 30941522 - 30941830
Alignment:
| Q |
22 |
tgtggaaacttcaccaatattagttatccattttggagtgctaacaaccaaccaagttattgtggccacccaaacttcaaccttgattgtgaacatggca |
121 |
Q |
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|||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30941522 |
tgtggaaatttcaccaacgttagttatccattttggagtgttaacaaccaaccaagttattgtggccacccaaacttcaaccttgattgtgaacatggca |
30941621 |
T |
|
| Q |
122 |
acttgactattgagatcaaatcacaaaagtttcacatcattgatataaatcaaacatctcgacttttgaggattgcacggttggatttatggagttatga |
221 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
30941622 |
acttgactattgagatcaagtcacaaaagtttcacatcattgatataaatcaaacatctcgacttttgaggattgcccggttggatttatggagtaatga |
30941721 |
T |
|
| Q |
222 |
tgatgatgctattgcttcttgtccagagaaatacatcaatgtaaacttagatttggatttcttcaactacacttccaattatgaaaattataccctattg |
321 |
Q |
| |
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|| || | |||||| ||||||||| ||||||| |||| ||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| |||||| |
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| T |
30941722 |
tgctgctactattgtttcttgtcccaagaaatatatcattgtaaacctagatttggatttcttcaactacacttccaagtatgaaaagtatacactattg |
30941821 |
T |
|
| Q |
322 |
tatgagtgt |
330 |
Q |
| |
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|| |||||| |
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| T |
30941822 |
tacgagtgt |
30941830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 22 - 330
Target Start/End: Original strand, 30983418 - 30983726
Alignment:
| Q |
22 |
tgtggaaacttcaccaatattagttatccattttggagtgctaacaaccaaccaagttattgtggccacccaaacttcaaccttgattgtgaacatggca |
121 |
Q |
| |
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|||||||| ||||||||||||||||| |||||||||||| ||||||||||| || ||||||||| || ||||||||||| ||||||||||||||||||| |
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| T |
30983418 |
tgtggaaatttcaccaatattagttacccattttggagtattaacaaccaacaaaattattgtggtcatccaaacttcaaacttgattgtgaacatggca |
30983517 |
T |
|
| Q |
122 |
acttgactattgagatcaaatcacaaaagtttcacatcattgatataaatcaaacatctcgacttttgaggattgcacggttggatttatggagttatga |
221 |
Q |
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||||||||||||| || || ||||||||||||||||||||||||||||||||||| || | | |||||||||||||| |||||||||||||||||||||| |
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| T |
30983518 |
acttgactattgaaattaagtcacaaaagtttcacatcattgatataaatcaaacttcacaagttttgaggattgcaaggttggatttatggagttatga |
30983617 |
T |
|
| Q |
222 |
tgatgatgctattgcttcttgtccagagaaatacatcaatgtaaacttagatttggatttcttcaactacacttccaattatgaaaattataccctattg |
321 |
Q |
| |
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| || | |||||||||||||||| ||||||| |||||||||| | |||||| ||| |||||||| ||||||||||||||||| || ||||| ||||| |
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| T |
30983618 |
ttctgctactattgcttcttgtcccaagaaatatatcaatgtaaccctagattcggaattcttcaattacacttccaattatgagaagtatacgctatta |
30983717 |
T |
|
| Q |
322 |
tatgagtgt |
330 |
Q |
| |
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||||||||| |
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| T |
30983718 |
tatgagtgt |
30983726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 22 - 330
Target Start/End: Original strand, 30989582 - 30989890
Alignment:
| Q |
22 |
tgtggaaacttcaccaatattagttatccattttggagtgctaacaaccaaccaagttattgtggccacccaaacttcaaccttgattgtgaacatggca |
121 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||| ||||||||||| || ||||||||| || ||||||||||| ||||||||||||||||||| |
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|
| T |
30989582 |
tgtggaaatttcaccaatattagttacccattttggagtattaacaaccaacaaaattattgtggtcatccaaacttcaaacttgattgtgaacatggca |
30989681 |
T |
|
| Q |
122 |
acttgactattgagatcaaatcacaaaagtttcacatcattgatataaatcaaacatctcgacttttgaggattgcacggttggatttatggagttatga |
221 |
Q |
| |
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||||||||||||| || || ||||||||||||||||||||||||||||||||||| || | | |||||||||||||| |||||||||||||||||||||| |
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| T |
30989682 |
acttgactattgaaattaagtcacaaaagtttcacatcattgatataaatcaaacttcacaagttttgaggattgcaaggttggatttatggagttatga |
30989781 |
T |
|
| Q |
222 |
tgatgatgctattgcttcttgtccagagaaatacatcaatgtaaacttagatttggatttcttcaactacacttccaattatgaaaattataccctattg |
321 |
Q |
| |
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| || | |||||||||||||||| ||||||| |||||||||| | |||||| ||| |||||||| ||||||||||||||||| || ||||| ||||| |
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| T |
30989782 |
ttctgctactattgcttcttgtcccaagaaatatatcaatgtaaccctagattcggaattcttcaattacacttccaattatgagaagtatacgctatta |
30989881 |
T |
|
| Q |
322 |
tatgagtgt |
330 |
Q |
| |
|
||||||||| |
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|
| T |
30989882 |
tatgagtgt |
30989890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 22 - 330
Target Start/End: Original strand, 31009303 - 31009611
Alignment:
| Q |
22 |
tgtggaaacttcaccaatattagttatccattttggagtgctaacaaccaaccaagttattgtggccacccaaacttcaaccttgattgtgaacatggca |
121 |
Q |
| |
|
|||||| | |||||||| |||||||| |||||||||||| ||||||||| | || ||||||||| || ||||||||| |||||||||||||||||| |
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|
| T |
31009303 |
tgtggagatttcaccaacattagttacccattttggagtattaacaaccatcaaaattattgtggtcatccaaacttcggagttgattgtgaacatggca |
31009402 |
T |
|
| Q |
122 |
acttgactattgagatcaaatcacaaaagtttcacatcattgatataaatcaaacatctcgacttttgaggattgcacggttggatttatggagttatga |
221 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || | | |||||||||||||| |||||||||||||||||||||| |
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|
| T |
31009403 |
acttgactattgaaatcaagtcacaaaagtttcacatcattgatataaatcaaacttcacaagttttgaggattgcaaggttggatttatggagttatga |
31009502 |
T |
|
| Q |
222 |
tgatgatgctattgcttcttgtccagagaaatacatcaatgtaaacttagatttggatttcttcaactacacttccaattatgaaaattataccctattg |
321 |
Q |
| |
|
| || | |||||||||||||||| ||||||| |||||||||| | |||||| ||| |||||||| ||||||||||||||||| || ||||| ||||| |
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| T |
31009503 |
ttctgctactattgcttcttgtcccaagaaatatatcaatgtaaccctagattcggaattcttcaattacacttccaattatgagaagtatacgctatta |
31009602 |
T |
|
| Q |
322 |
tatgagtgt |
330 |
Q |
| |
|
||||||||| |
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|
| T |
31009603 |
tatgagtgt |
31009611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 30976979 - 30977091
Alignment:
| Q |
22 |
tgtggaaacttcaccaatattagttatccattttggagtgctaacaaccaaccaagttattgtggccacccaaacttcaaccttgattgtgaacatggca |
121 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||| ||||||||||| || ||||||||| || ||||||||||| ||||||||||||||||||| |
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| T |
30976979 |
tgtggaaatttcaccaatattagttacccattttggagtattaacaaccaacaaaattattgtggtcatccaaacttcaaacttgattgtgaacatggca |
30977078 |
T |
|
| Q |
122 |
acttgactattga |
134 |
Q |
| |
|
||||||||||||| |
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|
| T |
30977079 |
acttgactattga |
30977091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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