View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10707_low_21 (Length: 355)
Name: NF10707_low_21
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 7 - 350
Target Start/End: Original strand, 4900432 - 4900776
Alignment:
| Q |
7 |
ataagcctttcagaacaagaacttgtagattgtgatactactaatgatggatgtgaaggaggatacatggattatgcttttgagtgggttataaacaatg |
106 |
Q |
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| T |
4900432 |
ataagcctttcagaacaagaacttgtagattgtgatactactaatgatggatgtgaaggaggatacatggattatgcttttgagtgggttataaacaatg |
4900531 |
T |
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| Q |
107 |
gtgggatagatacagaagctgattatccatacattggtgtggatggtacttgcaatgtcaccaaggtctttctattaacccttccttttcctcactatgt |
206 |
Q |
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| T |
4900532 |
gtgggatagatacagaagctgattatccatacattggtgtgggtggtacttgcaatgtcaccaaggtctttctattaacccttccttttcctcactatgt |
4900631 |
T |
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| Q |
207 |
attttgcattgtgaaagaacataacatatctgtatttaatttattatg-ttttttctttctttcttgaattaggaggaaaccaaatttgttaccattgat |
305 |
Q |
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| T |
4900632 |
attttgcattgtgaaagaacataacatatctgtgtttaatttattatgtttttttttttctttcttgaattaggaggaaaccaaagttgttaccattgat |
4900731 |
T |
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| Q |
306 |
ggctacactgatgtgacacaatcagatagtgctttgttctgtgct |
350 |
Q |
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| T |
4900732 |
ggctacactgatgtgacacaatcagatagtgctttgttttgtgct |
4900776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 7 - 350
Target Start/End: Original strand, 4947829 - 4948174
Alignment:
| Q |
7 |
ataagcctttcagaacaagaacttgtagattgtgatactactaatgatggatgtgaaggaggatacatggattatgcttttgagtgggttataaacaatg |
106 |
Q |
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| T |
4947829 |
ataagcctttcagaacaagaacttgtagattgtgatactactaatgatggatgtgaaggaggatacatggattatgcttttgagtgggttataaacaatg |
4947928 |
T |
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| Q |
107 |
gtgggatagatacagaagctgattatccatacattggtgtggatggtacttgcaatgtcaccaaggtctttctattaacccttccttttcctcactatgt |
206 |
Q |
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| T |
4947929 |
gtgggatagatacagaagctgattatccatacattggtgtgggtggtacttgcaatgtcaccaaggtctttctattaacccttccttttcctcactatgt |
4948028 |
T |
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| Q |
207 |
attttgcattgtgaaagaacataacatatctgtatttaatttattat--gttttttctttctttcttgaattaggaggaaaccaaatttgttaccattga |
304 |
Q |
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| T |
4948029 |
attttgcattgtgaaagaacataacatatctgtgtttaatttattattgtttttttttttctttcttgaattaggaggaaaccaaagttgttaccattga |
4948128 |
T |
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| Q |
305 |
tggctacactgatgtgacacaatcagatagtgctttgttctgtgct |
350 |
Q |
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| T |
4948129 |
tggctacactgatgtgacacaatcagatagtgctttgttttgtgct |
4948174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 198 - 350
Target Start/End: Original strand, 5009794 - 5009947
Alignment:
| Q |
198 |
tcactatgtattttgcattgtgaaagaacataacatatctgtatttaatttattatgttttttcttt-ctttcttgaattaggaggaaaccaaatttgtt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| |
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| T |
5009794 |
tcactatgtattttgcattgtgaaagaacataacatatctgtgtttaatttattatgtttttttttttctttcttgaattaggaggaaaccaaagttgtt |
5009893 |
T |
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| Q |
297 |
accattgatggctacactgatgtgacacaatcagatagtgctttgttctgtgct |
350 |
Q |
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| T |
5009894 |
accattgatggctacactgatgtgacacaatcagatagtgctttgttttgtgct |
5009947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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