View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10707_low_27 (Length: 337)
Name: NF10707_low_27
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 15 - 329
Target Start/End: Original strand, 40491614 - 40491928
Alignment:
| Q |
15 |
agaatataccatcttgaattgggaatgtgacaaaaactttaagtgatgattctacttttgtcccaagatggtttgaaaggtcaaaagtatacctatattg |
114 |
Q |
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| T |
40491614 |
agaatataccatcttgaattgggaatgtgacaaaaactttaagtgatgattctacttttgtcccaagatggtttgaaaggtcaaaagtatacctatattg |
40491713 |
T |
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| Q |
115 |
gttaatgatttggagattctcaaaatattcagtaaatcttagcaatgtatgatgattgatgacatgaatggttaataatacgtgtagtgtagctttttgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40491714 |
gttaatgatttggagattctcaaaatattcagtaaatcttagcaatgtatgatgattgatgacatgaatggttaataatacgtgtagtgtagctttttgt |
40491813 |
T |
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| Q |
215 |
agataagtgggtgatgatgtggtaatttatttaggtaagagtatctggcacataaagctttggtcaccttatttctctttttggtgattatatatacaca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40491814 |
agataagtgggtgatgatgtggtaatttatttaggtaagagtatctggcacataaagctttggtcaccttatttctctttttggtgattatatatacaca |
40491913 |
T |
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| Q |
315 |
cccttaattcttctc |
329 |
Q |
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| T |
40491914 |
cccttaattcttctc |
40491928 |
T |
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