View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10707_low_3 (Length: 559)
Name: NF10707_low_3
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 9 - 543
Target Start/End: Original strand, 46462771 - 46463305
Alignment:
| Q |
9 |
agcaaagggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
108 |
Q |
| |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46462771 |
agcaatgggggtggaaatagcaaaaggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
46462870 |
T |
|
| Q |
109 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46462871 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
46462970 |
T |
|
| Q |
209 |
tgggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgtattagatttctgttctatagggaatgaattaaaatctgtagatttt |
308 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46462971 |
tgggtttgattgctttggcctttacagagtatgttaagggtacctcccttgtgtaatagatttctgttctatagggaatgaattaaaatctgtagatttt |
46463070 |
T |
|
| Q |
309 |
tgttagaaaccaatatatggaactgtgtatattgtcatatagtttcttctttgagannnnnnnaattatccttttttcaagtgaatgtaatagttccctt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
46463071 |
tgttagaaaccaatatatggaactgtgtatattgtcatatagtttcttctttgagatttttttaattatccttttttcaagtgaatgtaatagttctctt |
46463170 |
T |
|
| Q |
409 |
atacttgaaaagaaatcttctaatatcttccacttgaaatttctacttttgcctatgattattctcttattgttaagggtttttctacaaactaattgtg |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46463171 |
atacttgaaaagaaatcttctaatatcttccacttgaaatttctacttttgcctatgattattctcttattgttaagggtttttctacaaaataattgtg |
46463270 |
T |
|
| Q |
509 |
ttcaaaactattagggagatttgagtgtatatttg |
543 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
46463271 |
ttcaaaactattagggagatttgagtgtatatttg |
46463305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 9 - 273
Target Start/End: Original strand, 46451803 - 46452067
Alignment:
| Q |
9 |
agcaaagggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
108 |
Q |
| |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46451803 |
agcaatgggggtggaaatagcaaaaggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
46451902 |
T |
|
| Q |
109 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46451903 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
46452002 |
T |
|
| Q |
209 |
tgggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgtattagatttct |
273 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
46452003 |
tgggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgtaatagatttct |
46452067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 9 - 273
Target Start/End: Complemental strand, 46344753 - 46344489
Alignment:
| Q |
9 |
agcaaagggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
108 |
Q |
| |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46344753 |
agcaatgggggtggaaatagcaaaaggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
46344654 |
T |
|
| Q |
109 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46344653 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
46344554 |
T |
|
| Q |
209 |
tgggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgtattagatttct |
273 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
46344553 |
tgggtttgattgctttggcctttacagagtatgttaagggtacctcccttgtgtaatagatttct |
46344489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 10 - 263
Target Start/End: Original strand, 46466194 - 46466447
Alignment:
| Q |
10 |
gcaaagggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttg |
109 |
Q |
| |
|
|||| |||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| || ||| |
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| T |
46466194 |
gcaatgggggtggaattagcaaaagggcagggtttgttcgatcaaatatctggtggtggaatcccatggttcttgtatacaagtgtgttgttgacagttg |
46466293 |
T |
|
| Q |
110 |
cttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgtt |
209 |
Q |
| |
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|||||||| ||||||| || ||||||||||||||||||| |||||||||||| | ||||| ||| ||||||| || ||||||||||||||||||||||| |
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| T |
46466294 |
cttctttggttccattatttgaaggtgttagtgttgagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattgctatgtt |
46466393 |
T |
|
| Q |
210 |
gggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgta |
263 |
Q |
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||||||||||||| ||||| ||||||| |||||||||||||| |||||||||| |
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|
| T |
46466394 |
gggtttgattgctctggctgttacagaatatgttaagggtactgcccttgtgta |
46466447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 10 - 263
Target Start/End: Original strand, 46471399 - 46471652
Alignment:
| Q |
10 |
gcaaagggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttg |
109 |
Q |
| |
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|||| |||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| || ||| |
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| T |
46471399 |
gcaatgggggtggaattagcaaaagggcagggtttgttcgatcaaatatctggtggtggaatcccatggttcttgtatacaagtgtgttgttgacagttg |
46471498 |
T |
|
| Q |
110 |
cttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgtt |
209 |
Q |
| |
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|||||||| ||||||| || ||||||||||||||||||| |||||||||||| | ||||| ||| ||||||| || ||||||||||||||||||||||| |
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| T |
46471499 |
cttctttggttccattatttgaaggtgttagtgttgagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattgctatgtt |
46471598 |
T |
|
| Q |
210 |
gggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgta |
263 |
Q |
| |
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||||||||||||| ||||| ||||||| |||||||||||||| |||||||||| |
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|
| T |
46471599 |
gggtttgattgctctggctgttacagaatatgttaagggtactgcccttgtgta |
46471652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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