View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10707_low_34 (Length: 304)
Name: NF10707_low_34
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 6 - 238
Target Start/End: Original strand, 41035698 - 41035930
Alignment:
| Q |
6 |
agaagcagagattgataggcttccatacttgcaagcagtgataaaagagagtttacgcttacacccttcagctccacttttgctcccacgtaaagctagg |
105 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41035698 |
agaatcagacattgataggcttccatacttgcaagcagtgataaaagagagtttacgcttacaccctccagctccacttttgctcccacgtaaagctaga |
41035797 |
T |
|
| Q |
106 |
gtagatgtggaaatagcagtgtacactattccaaagggtgcacaaattcagataaatgaatgggctattggtagaacaaacatatgggatgatgctgatt |
205 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41035798 |
gtagatgtgcaaatagcagtgtacactattccaaagggtgcacaaattcggataaatgaatgggctattggtagaacaaacatatgggatgatgctgatt |
41035897 |
T |
|
| Q |
206 |
tattttcaccagaaagatttttaggatctgaaa |
238 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
41035898 |
tattttcaccagaaagatttttaggatctgaaa |
41035930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 41038858 - 41038898
Alignment:
| Q |
250 |
atgcatgacgtgattaaagaaaatcattcacatgatctaac |
290 |
Q |
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| T |
41038858 |
atgcatgacgtgattaaagaaaatcattcacgtgatctaac |
41038898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 41108109 - 41108336
Alignment:
| Q |
11 |
cagagattgataggcttccatacttgcaagcagtgataaaagagagtttacgcttacacccttcagctccacttttgctcccacgtaaagctagggtaga |
110 |
Q |
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|||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||| |||||||| | || || || | ||||| |||||||| |
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| T |
41108109 |
cagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgtttacaccctccagctccaatgttacttcctaggaaagcaagggtaga |
41108208 |
T |
|
| Q |
111 |
tgtggaaatagcagtgtacactattccaaagggtgcacaaattcagataaatgaatgggctattggtagaacaaacatatgggatgatgctgatttattt |
210 |
Q |
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|||||||||||||| ||||| |||||||| ||||||||| ||| ||| |||||||||||||||||||||||| ||||||||||||||||| |||| ||| |
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| T |
41108209 |
tgtggaaatagcaggttacacaattccaaaaggtgcacaagttctgatcaatgaatgggctattggtagaacagacatatgggatgatgctcatttgttt |
41108308 |
T |
|
| Q |
211 |
tcaccagaaagatttttaggatctgaaa |
238 |
Q |
| |
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||||||||||||||||| || ||||||| |
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| T |
41108309 |
tcaccagaaagatttttgggttctgaaa |
41108336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 41129233 - 41129460
Alignment:
| Q |
11 |
cagagattgataggcttccatacttgcaagcagtgataaaagagagtttacgcttacacccttcagctccacttttgctcccacgtaaagctagggtaga |
110 |
Q |
| |
|
|||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||| |||||||| | || || || | ||||| |||||||| |
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| T |
41129233 |
cagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgtttacaccctccagctccaatgttacttcctaggaaagcaagggtaga |
41129332 |
T |
|
| Q |
111 |
tgtggaaatagcagtgtacactattccaaagggtgcacaaattcagataaatgaatgggctattggtagaacaaacatatgggatgatgctgatttattt |
210 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||||||| ||| ||| |||||||||||||||||||||||| ||||||||||||||||| |||| ||| |
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| T |
41129333 |
tgtggaaatagcaggttacacaattccaaaaggtgcacaagttctgatcaatgaatgggctattggtagaacagacatatgggatgatgctcatttgttt |
41129432 |
T |
|
| Q |
211 |
tcaccagaaagatttttaggatctgaaa |
238 |
Q |
| |
|
||||||||||||||||| || ||||||| |
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|
| T |
41129433 |
tcaccagaaagatttttgggttctgaaa |
41129460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 41143450 - 41143223
Alignment:
| Q |
11 |
cagagattgataggcttccatacttgcaagcagtgataaaagagagtttacgcttacacccttcagctccacttttgctcccacgtaaagctagggtaga |
110 |
Q |
| |
|
|||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||| |||||||| | || || || | ||||| |||||||| |
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| T |
41143450 |
cagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgtttacaccctccagctccaatgttacttcctaggaaagcaagggtaga |
41143351 |
T |
|
| Q |
111 |
tgtggaaatagcagtgtacactattccaaagggtgcacaaattcagataaatgaatgggctattggtagaacaaacatatgggatgatgctgatttattt |
210 |
Q |
| |
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|||||||||||||| ||||| |||||||| ||||||||| ||| ||| |||||||||||||||||||||||| ||||||||||||||||| |||| ||| |
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| T |
41143350 |
tgtggaaatagcaggttacacaattccaaaaggtgcacaagttctgatcaatgaatgggctattggtagaacagacatatgggatgatgctcatttgttt |
41143251 |
T |
|
| Q |
211 |
tcaccagaaagatttttaggatctgaaa |
238 |
Q |
| |
|
||||||||||||||||| || ||||||| |
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| T |
41143250 |
tcaccagaaagatttttgggttctgaaa |
41143223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 41119308 - 41119081
Alignment:
| Q |
11 |
cagagattgataggcttccatacttgcaagcagtgataaaagagagtttacgcttacacccttcagctccacttttgctcccacgtaaagctagggtaga |
110 |
Q |
| |
|
|||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||| |||||||| | || || || | ||||| |||||||| |
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| T |
41119308 |
cagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgtttacaccctccagctccaatgttacttcctaggaaagcaagggtaga |
41119209 |
T |
|
| Q |
111 |
tgtggaaatagcagtgtacactattccaaagggtgcacaaattcagataaatgaatgggctattggtagaacaaacatatgggatgatgctgatttattt |
210 |
Q |
| |
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|||||||||||||| ||||| |||||||| ||||||||| ||| ||| |||||||||||||||||||||||| |||||||||||||||| |||| ||| |
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| T |
41119208 |
tgtggaaatagcaggttacacaattccaaaaggtgcacaagttctgatcaatgaatgggctattggtagaacagacatatgggatgatgcacatttgttt |
41119109 |
T |
|
| Q |
211 |
tcaccagaaagatttttaggatctgaaa |
238 |
Q |
| |
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||||||||||||||||| || ||||||| |
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|
| T |
41119108 |
tcaccagaaagatttttgggttctgaaa |
41119081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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