View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10707_low_39 (Length: 281)

Name: NF10707_low_39
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10707_low_39
NF10707_low_39
[»] chr8 (5 HSPs)
chr8 (35-259)||(34866623-34866847)
chr8 (35-221)||(34389579-34389765)
chr8 (30-173)||(10551685-10551828)
chr8 (44-154)||(9519017-9519127)
chr8 (67-172)||(37987529-37987634)
[»] chr1 (6 HSPs)
chr1 (35-216)||(41919796-41919977)
chr1 (35-204)||(24685075-24685243)
chr1 (46-149)||(17032835-17032939)
chr1 (30-191)||(4651145-4651304)
chr1 (30-119)||(31586262-31586351)
chr1 (52-104)||(24450450-24450501)
[»] chr7 (6 HSPs)
chr7 (35-216)||(38305574-38305755)
chr7 (41-175)||(3420231-3420365)
chr7 (46-150)||(47326447-47326551)
chr7 (50-191)||(38484915-38485055)
chr7 (50-149)||(37792712-37792811)
chr7 (50-106)||(12480298-12480355)
[»] chr4 (8 HSPs)
chr4 (35-216)||(30963777-30963958)
chr4 (35-148)||(16501154-16501267)
chr4 (44-151)||(31051226-31051333)
chr4 (72-191)||(35799957-35800076)
chr4 (52-106)||(46699512-46699566)
chr4 (55-93)||(4305075-4305113)
chr4 (67-120)||(38929125-38929178)
chr4 (55-91)||(7702937-7702973)
[»] chr3 (4 HSPs)
chr3 (32-204)||(19175830-19176001)
chr3 (30-151)||(1653477-1653598)
chr3 (46-191)||(20611145-20611289)
chr3 (46-127)||(17501810-17501891)
[»] chr6 (4 HSPs)
chr6 (35-226)||(16510854-16511045)
chr6 (50-131)||(12793536-12793617)
chr6 (231-260)||(16511068-16511097)
chr6 (50-78)||(9223377-9223405)
[»] chr2 (6 HSPs)
chr2 (46-214)||(39339408-39339574)
chr2 (40-129)||(31902955-31903044)
chr2 (65-125)||(2062247-2062307)
chr2 (50-119)||(22886068-22886137)
chr2 (44-151)||(27739128-27739235)
chr2 (50-115)||(29486398-29486463)
[»] chr5 (2 HSPs)
chr5 (52-151)||(27712379-27712478)
chr5 (67-172)||(697664-697769)


Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 35 - 259
Target Start/End: Original strand, 34866623 - 34866847
Alignment:
Q  35 cacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggcc 134  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| |    
T  34866623 cacaaacataaatttagaggaagacgaaatccaacaacaaaacacgggcagcgacgccggtttgaagcggaaccacaacccaggtcataaaaaggcggtc 34866722  T
Q  135 gcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatttgaacaacactacccgcaacctactcaca 234  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34866723 gcctgtgacaaggagaatgttttcgtcgccgtagtaaaagagaatcaatggtggagcaaaaatggcggatttgaacaacactacccgcaacctactcaca 34866822  T
Q  235 tcaccaccaccacacaacctaaact 259  Q
    |||||||||||||||||||||||||    
T  34866823 tcaccaccaccacacaacctaaact 34866847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 35 - 221
Target Start/End: Original strand, 34389579 - 34389765
Alignment:
Q  35 cacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggcc 134  Q
    |||| |||||||||||||||| |||||||| | ||||||||||||||| |||||||||| |||||||||||| ||||||||||||||| | || |||||     
T  34389579 cacaaacataaatctagaggaggacgaaattccacaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacccagatcatgacaaagcggct 34389678  T
Q  135 gcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatttgaacaacactacccg 221  Q
    |||||||||||||||||||  |||||| |||||||||||||||| ||||||||||||||||||||| ||| |||| |||||| ||||    
T  34389679 gcctgtgacaaggagaatgtgttcgtcgccgtagtaaaagagaaccaatggtggagcaaaaacggcagatctgaataacacttcccg 34389765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 30 - 173
Target Start/End: Complemental strand, 10551828 - 10551685
Alignment:
Q  30 agcagcacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaagg 129  Q
    |||| |||| ||||| |||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| ||| |||| |||||||||||||    
T  10551828 agcaacacaaacatagatctagaggaagacgaaacccaacaacaaagcacgggcagcgacgccgatttgaagcggaaacacgaccccgatcataaaaagg 10551729  T
Q  130 cggccgcctgtgacaaggagaatgctttcgtcaccgtagtaaaa 173  Q
    | | || | |||||||||||||  | || ||||||| |||||||    
T  10551728 ctgtcgtcggtgacaaggagaagacatttgtcaccggagtaaaa 10551685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 44 - 154
Target Start/End: Complemental strand, 9519127 - 9519017
Alignment:
Q  44 aaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgac 143  Q
    |||||||||| ||||||||| |||||||||||||||||| |||||||| | |||||||||| | ||||||||| ||  ||| || |  ||| ||| ||||    
T  9519127 aaatctagagaaagacgaaacccaacaacaaaacacgggcagcgacgctggtttgaagcgggaacacaacccaaatagtaacaatgttgccacctttgac 9519028  T
Q  144 aaggagaatgc 154  Q
    |||||||||||    
T  9519027 aaggagaatgc 9519017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 172
Target Start/End: Original strand, 37987529 - 37987634
Alignment:
Q  67 aacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagaatgctttcgtcaccgt 166  Q
    ||||||| |||||||| |||||||||| | |||||||||| | ||||| ||||| |||| | ||  ||||| ||||||||||||| |||| || |||||     
T  37987529 aacaacataacacgggcagcgacgccggtctgaagcggaaactcaacctagatcgtaaacacgcacccgccggtgacaaggagaaggcttccggcaccga 37987628  T
Q  167 agtaaa 172  Q
    ||||||    
T  37987629 agtaaa 37987634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 35 - 216
Target Start/End: Complemental strand, 41919977 - 41919796
Alignment:
Q  35 cacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggcc 134  Q
    |||| ||||||||||||||||||| ||||||| ||||||||||||||| | |||||| | |||||||||||||||||||||||||||| ||| ||||||     
T  41919977 cacaaacataaatctagaggaagatgaaatcccacaacaaaacacgggcaacgacgctggtttgaagcggaaccacaacccagatcattaaatggcggca 41919878  T
Q  135 gcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatttgaacaacact 216  Q
    |||||||||||||||||||  |||||  |||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  41919877 gcctgtgacaaggagaatgtgttcgttgccgtagtaaaagagaaccaatggtggagcaaaaacggcggatctgaacaacact 41919796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 35 - 204
Target Start/End: Original strand, 24685075 - 24685243
Alignment:
Q  35 cacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggcc 134  Q
    |||| ||||||||||| ||  |||| |||| ||||||||||||||||| |||||||||| |||||||| ||||||||||||| |||||||||||  ||||    
T  24685075 cacaaacataaatctaaagagagacaaaattcaacaacaaaacacgggcagcgacgccggtttgaagcagaaccacaacccatatcataaaaagctggcc 24685174  T
Q  135 gcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggat 204  Q
    |||||||||||||||||||  |||||| ||||||||||| |||| ||||||||||||||||| |||||||    
T  24685175 gcctgtgacaaggagaatgtgttcgtcgccgtagtaaaa-agaaccaatggtggagcaaaaatggcggat 24685243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 149
Target Start/End: Complemental strand, 17032939 - 17032835
Alignment:
Q  46 atctagaggaagacgaaatccaacaac-aaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgaca 144  Q
    ||||||||||||||||||||||||||| ||||||| || || ||| ||| | |||||| ||| |||||||| ||||| ||||| | ||||||| ||||||    
T  17032939 atctagaggaagacgaaatccaacaacaaaaacacaggtagtgaccccggtgtgaagcagaatcacaaccctgatcaaaaaaatgtggccgccggtgaca 17032840  T
Q  145 aggag 149  Q
    |||||    
T  17032839 aggag 17032835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 191
Target Start/End: Complemental strand, 4651304 - 4651145
Alignment:
Q  30 agcagcacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaagg 129  Q
    |||| |||| ||||| |||  ||||||||||||| | |||||||||||||  | |||||| ||| ||||||||||||  ||||| | |||  ||||||||    
T  4651304 agcaacacaaacatagatcatgaggaagacgaaacctaacaacaaaacacaagcagcgacaccggtttgaagcggaa--acaactccgattgtaaaaagg 4651207  T
Q  130 cggccgcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagc 191  Q
    | |||| | |||| ||||||||  | |  ||| ||| |||||||||||||||||||||||||    
T  4651206 cagccgtcagtgataaggagaagacatctgtcgccggagtaaaagagaatcaatggtggagc 4651145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 31586262 - 31586351
Alignment:
Q  30 agcagcacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagat 119  Q
    |||| ||| |||| ||||| |||| ||||||||| |||||||||||||||||| |||||||||| | |||||||| | ||| ||||||||    
T  31586262 agcaacactgacacaaatccagagaaagacgaaacccaacaacaaaacacgggcagcgacgccggtctgaagcgggaacacgacccagat 31586351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 24450450 - 24450501
Alignment:
Q  52 aggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcgg 104  Q
    ||||||| |||| |||||||||||||||||| |||||||| | ||||||||||    
T  24450450 aggaagatgaaacccaacaacaaaacacgggcagcgacgcag-tttgaagcgg 24450501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 7e-58; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 35 - 216
Target Start/End: Complemental strand, 38305755 - 38305574
Alignment:
Q  35 cacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggcc 134  Q
    |||| |||| ||||||||||||||||||||||||||||||||||| || ||| |||||| |||||||||||||||||||||| |||||  ||||||||||    
T  38305755 cacaaacatcaatctagaggaagacgaaatccaacaacaaaacacaggcagcaacgccggtttgaagcggaaccacaacccatatcatttaaaggcggcc 38305656  T
Q  135 gcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatttgaacaacact 216  Q
    | ||||||||| |||||||| |||||| |||||||||||||||  ||||||||||||||||||||||||| |||||| ||||    
T  38305655 gactgtgacaacgagaatgcgttcgtcgccgtagtaaaagagagccaatggtggagcaaaaacggcggatatgaacagcact 38305574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 41 - 175
Target Start/End: Original strand, 3420231 - 3420365
Alignment:
Q  41 cataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgt 140  Q
    ||||||| ||||||||||||||| | |||||||||||||| | |||||||||| || ||||||||||||||||| ||||||||||||||||| | |||||    
T  3420231 cataaatttagaggaagacgaaaccaaacaacaaaacacgagcagcgacgccggttcgaagcggaaccacaacctagatcataaaaaggcggtctcctgt 3420330  T
Q  141 gacaaggagaatgctttcgtcaccgtagtaaaaga 175  Q
     ||| ||||||||| |||||| |||||||||||||    
T  3420331 aacagggagaatgcgttcgtcgccgtagtaaaaga 3420365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 47326447 - 47326551
Alignment:
Q  46 atctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaa 145  Q
    ||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||| | || ||||||| | |||||| ||||||||||||| |||||||    
T  47326447 atctagaggaagaggaaatccaacaacaaaacacgggcagcgacaccgatttgaagtgaaaacacaaccgaaatcatagaaaggcggccgccggtgacaa 47326546  T
Q  146 ggaga 150  Q
    |||||    
T  47326547 ggaga 47326551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 191
Target Start/End: Complemental strand, 38485055 - 38484915
Alignment:
Q  50 agaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggag 149  Q
    |||||||||||||| |  ||||||||||| ||| |||||||||| |||||||||||| ||||||||  ||| |||||||| ||||| | |||||||||||    
T  38485055 agaggaagacgaaacctgacaacaaaacatgggcagcgacgccggtttgaagcggaaacacaaccc-catcgtaaaaaggtggccgtcagtgacaaggag 38484957  T
Q  150 aatgctttcgtcaccgtagtaaaagagaatcaatggtggagc 191  Q
    ||  | |  ||| ||| ||||||| |||| ||||||||||||    
T  38484956 aagacatctgtcgccggagtaaaatagaaacaatggtggagc 38484915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 149
Target Start/End: Complemental strand, 37792811 - 37792712
Alignment:
Q  50 agaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggag 149  Q
    |||| |||| |||| |||||| ||||||||||  | |||||||| |||||||||||| ||||||||| ||| |||||||||   |||| |||||||||||    
T  37792811 agagaaagatgaaacccaacagcaaaacacggacaacgacgccggtttgaagcggaaacacaacccatatcgtaaaaaggcaatcgccggtgacaaggag 37792712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 12480355 - 12480298
Alignment:
Q  50 agaggaagac-gaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaa 106  Q
    |||||||||| |||| |||||||||||||||| | |||||||||| ||||||| ||||    
T  12480355 agaggaagactgaaaaccaacaacaaaacacgagcagcgacgccggtttgaagtggaa 12480298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 7e-58; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 35 - 216
Target Start/End: Complemental strand, 30963958 - 30963777
Alignment:
Q  35 cacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggcc 134  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| | |||||||| ||||||| ||||||||||||||||||||||||||  || |    
T  30963958 cacaaacataaatctagaggaagacgaaatccaaccacaaaacacgggcatcgacgccggtttgaagtggaaccacaacccagatcataaaaagatggtc 30963859  T
Q  135 gcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatttgaacaacact 216  Q
    |||||||||||||||||||| ||||||   |||||||||||||| ||||||||||| ||||||||||||| |||||| ||||    
T  30963858 gcctgtgacaaggagaatgcgttcgtcgttgtagtaaaagagaaccaatggtggagaaaaaacggcggatctgaacagcact 30963777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 148
Target Start/End: Complemental strand, 16501267 - 16501154
Alignment:
Q  35 cacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggcc 134  Q
    |||| ||| |||| ||||||||||| ||| ||||||||| |||| ||| |||||||||| ||||||| |||| ||||||||| ||| || |||| |||||    
T  16501267 cacaaacacaaatttagaggaagactaaaaccaacaacacaacatgggcagcgacgccggtttgaagtggaatcacaacccaaatcgtataaagacggcc 16501168  T
Q  135 gcctgtgacaagga 148  Q
    ||| ||||||||||    
T  16501167 gccggtgacaagga 16501154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 151
Target Start/End: Original strand, 31051226 - 31051333
Alignment:
Q  44 aaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgac 143  Q
    ||||||| ||||||| | || |||||||||||||||||| |||||||||| | |||||||||  ||||||||| ||| ||||||||||||| ||  | ||    
T  31051226 aaatctaaaggaagatgtaacccaacaacaaaacacgggcagcgacgccggtctgaagcggacacacaacccaaatcgtaaaaaggcggccaccgataac 31051325  T
Q  144 aaggagaa 151  Q
    ||||||||    
T  31051326 aaggagaa 31051333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 191
Target Start/End: Complemental strand, 35800076 - 35799957
Alignment:
Q  72 caaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagaatgctttcgtcaccgtagtaa 171  Q
    ||||||||||| | ||||||||||||||| ||||| || |||||| | | ||||||||||| || | || |||||||||| || | |||||||| ||||     
T  35800076 caaaacacgggcaacgacgccgatttgaaacggaaacataacccataacgtaaaaaggcggtcgtcggtaacaaggagaaggcgtccgtcaccggagtac 35799977  T
Q  172 aagagaatcaatggtggagc 191  Q
    ||||||| ||||||||||||    
T  35799976 aagagaaccaatggtggagc 35799957  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 46699512 - 46699566
Alignment:
Q  52 aggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaa 106  Q
    ||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||||    
T  46699512 aggaagatgaattccaacaacaatacacgggcagcgacgccgatttgaagcggaa 46699566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 4305113 - 4305075
Alignment:
Q  55 aagacgaaatccaacaacaaaacacgggaagcgacgccg 93  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  4305113 aagacgaaatccaacaacaaaacacgggcagcgacgccg 4305075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 38929178 - 38929125
Alignment:
Q  67 aacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatc 120  Q
    |||||||||||||||| || ||||||| | |||||||||| ||||||| |||||    
T  38929178 aacaacaaaacacgggcagtgacgccggtctgaagcggaaacacaacctagatc 38929125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 7702973 - 7702937
Alignment:
Q  55 aagacgaaatccaacaacaaaacacgggaagcgacgc 91  Q
    ||||||||||||||||||||||||| || ||||||||    
T  7702973 aagacgaaatccaacaacaaaacacaggcagcgacgc 7702937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 32 - 204
Target Start/End: Complemental strand, 19176001 - 19175830
Alignment:
Q  32 cagcacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcg 131  Q
    ||||||| ||||||||||| ||| |||| |||||||||||||||||||||| ||||| |||| ||||||| |||||||||||||| |||||||||||||     
T  19176001 cagcacaaacataaatctaaagggagacaaaatccaacaacaaaacacgggcagcgatgccggtttgaagaggaaccacaacccatatcataaaaaggca 19175902  T
Q  132 gccgcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggat 204  Q
    ||||||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||||||||||||||    
T  19175901 gccgcctgtgacaaggagaatgcattcgtcgccgtagtaaaa-agaaccaatggtggagcaaaaacggcggat 19175830  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 1653477 - 1653598
Alignment:
Q  30 agcagcacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaagg 129  Q
    |||| |||| |||||||| | |||||||||||||||||||||||||||||||| | |||||||| ||||||||| ||  |||||||||||| ||| ||||    
T  1653477 agcaacacaaacataaatatggaggaagacgaaatccaacaacaaaacacgggcatcgacgccggtttgaagcgaaaagacaacccagatcgtaacaagg 1653576  T
Q  130 cggccgcctgtgacaaggagaa 151  Q
      |||||| |||||||||||||    
T  1653577 ttgccgccagtgacaaggagaa 1653598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 191
Target Start/End: Complemental strand, 20611289 - 20611145
Alignment:
Q  46 atctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaa 145  Q
    ||||||| ||||| ||||||||||||||||||||| | ||||||| || ||||||| | || ||||||| | |||||| |||||||||||||  ||||||    
T  20611289 atctagatgaagaggaaatccaacaacaaaacacgagcagcgacgtcggtttgaagtgaaagcacaaccaaaatcatagaaaggcggccgccgatgacaa 20611190  T
Q  146 ggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagc 191  Q
    |||| | || ||||||  || |||||||||||| ||||||||||||    
T  20611189 ggag-aggcgttcgtcggcggagtaaaagagaaccaatggtggagc 20611145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 127
Target Start/End: Original strand, 17501810 - 17501891
Alignment:
Q  46 atctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaa 127  Q
    |||||||||||||||||||| |||||||||||||||  |  |||| |  |||||||||||| ||||||| ||||| ||||||    
T  17501810 atctagaggaagacgaaatctaacaacaaaacacggacaatgacgtcagtttgaagcggaaacacaacctagatcgtaaaaa 17501891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 35 - 226
Target Start/End: Original strand, 16510854 - 16511045
Alignment:
Q  35 cacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggcc 134  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |||| |||||||| ||||||||||||| ||||||||||||| | |    
T  16510854 cacaaacataaatctagaggaagacgacatccaacaacaaaacacgggcagcgatgccggtttgaagcagaaccacaacccatatcataaaaaggcagtc 16510953  T
Q  135 gcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatttgaacaacactacccgcaacc 226  Q
    || ||||||||||||||||  ||| || |||||||||||||||| ||||||||||||||||||||||| | |||||| |||| |||| ||||    
T  16510954 gcttgtgacaaggagaatgtgttcatctccgtagtaaaagagaaacaatggtggagcaaaaacggcggttctgaacagcacttcccggaacc 16511045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 12793617 - 12793536
Alignment:
Q  50 agaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcg 131  Q
    |||||||||||||||||| || ||||||||||| | |||||||  ||||||||| || ||||||||| ||| ||||||||||    
T  12793617 agaggaagacgaaatccatcaccaaaacacgggcaacgacgccagtttgaagcgaaaacacaacccatatcgtaaaaaggcg 12793536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 260
Target Start/End: Original strand, 16511068 - 16511097
Alignment:
Q  231 cacatcaccaccaccacacaacctaaactg 260  Q
    ||||||||||||||||||||||||||||||    
T  16511068 cacatcaccaccaccacacaacctaaactg 16511097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 78
Target Start/End: Complemental strand, 9223405 - 9223377
Alignment:
Q  50 agaggaagacgaaatccaacaacaaaaca 78  Q
    |||||||||||||||||||||||||||||    
T  9223405 agaggaagacgaaatccaacaacaaaaca 9223377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 46 - 214
Target Start/End: Original strand, 39339408 - 39339574
Alignment:
Q  46 atctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaa 145  Q
    ||||||||||||| ||||||||||||||||||||| | ||||||| || ||||||| | || ||||||| | |||||| ||||||||||||| |||||||    
T  39339408 atctagaggaagaggaaatccaacaacaaaacacgagcagcgacgtcggtttgaagtgaaaacacaaccaaaatcatagaaaggcggccgccggtgacaa 39339507  T
Q  146 ggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatttgaacaaca 214  Q
    |||| | || ||||||  || |||||||||||| ||||||||||||   |||||||||| |||||||||    
T  39339508 ggag-aggcgttcgtcggcggagtaaaagagaaccaatggtggagc-gtaacggcggatctgaacaaca 39339574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 31902955 - 31903044
Alignment:
Q  40 acataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaagg 129  Q
    ||||| |||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||| ||||||| ||||||||||||||    
T  31902955 acatagatctagaggaagacgaaacccaacaacaaaacacgggcagcgacgccggtttgaagcggaaacacaacctagatcataaaaagg 31903044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 2062307 - 2062247
Alignment:
Q  65 ccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaa 125  Q
    |||||||||||||||||| |||||||||| | |||||||||| ||||||||||||| ||||    
T  2062307 ccaacaacaaaacacgggcagcgacgccggtctgaagcggaaacacaacccagatcgtaaa 2062247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 22886068 - 22886137
Alignment:
Q  50 agaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagat 119  Q
    ||||||||| |||| |||||||||||||||||  |||||||||  | |||||||||| || |||||||||    
T  22886068 agaggaagatgaaacccaacaacaaaacacggatagcgacgccagtctgaagcggaaacaaaacccagat 22886137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 27739235 - 27739128
Alignment:
Q  44 aaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgac 143  Q
    ||||| ||||||||| |||| | ||||||||||||| || ||||||| ||   |||||||||| |||||| ||||||  ||||||| |||| |  |||||    
T  27739235 aaatcaagaggaagatgaaaccaaacaacaaaacacaggcagcgacgtcgccctgaagcggaaacacaacgcagatcgaaaaaaggtggccactagtgac 27739136  T
Q  144 aaggagaa 151  Q
    ||| ||||    
T  27739135 aagaagaa 27739128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 29486463 - 29486398
Alignment:
Q  50 agaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaaccc 115  Q
    ||||| |||||||| | |||||||||||  ||| |||||||||| | |||||||||| ||||||||    
T  29486463 agagggagacgaaaccaaacaacaaaacttgggcagcgacgccggtctgaagcggaaacacaaccc 29486398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 27712478 - 27712379
Alignment:
Q  52 aggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagaa 151  Q
    ||||||| |||| |||||||||||||||||| | |||||||| | |||||  ||| ||||| | ||||| |||| ||||  || || |||||||||||||    
T  27712478 aggaagatgaaacccaacaacaaaacacgggcaacgacgccggtctgaagtagaaacacaatctagatcgtaaacaggcaaccaccggtgacaaggagaa 27712379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 172
Target Start/End: Complemental strand, 697769 - 697664
Alignment:
Q  67 aacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagaatgctttcgtcaccgt 166  Q
    |||||||  ||||||| |||||||||| | |||||||||| | ||||| ||||| |||| ||||    ||| ||||||||||||| |||| || |||||     
T  697769 aacaacagcacacgggcagcgacgccggtctgaagcggaaactcaacctagatcgtaaacaggcacatgccagtgacaaggagaaggcttccggcaccga 697670  T
Q  167 agtaaa 172  Q
    ||||||    
T  697669 agtaaa 697664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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