View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10707_low_41 (Length: 275)
Name: NF10707_low_41
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 3 - 259
Target Start/End: Complemental strand, 41866703 - 41866440
Alignment:
| Q |
3 |
ccctccctatatgttcccttttgttctctctccctctaagactcatttttctccaacatcaaatatcatcttccattcagcctctccttaccttccttca |
102 |
Q |
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| T |
41866703 |
ccctccctatacgttcccttttgttctctctccctctaagactcatttttctccaacatcaaatatcatcttccattcatcctctccctaacttccttca |
41866604 |
T |
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| Q |
103 |
attttcaatcttccttctctctcattacaattttccctctaaagaacagaaaccctccatgaattcaattcaaatgcccacaaatgaagtgnnnnnnnta |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
41866603 |
attttcaatcttccttctctctcattacaattttccctctaaagaacagaaaccctccatgaattcaattcaaatgcccacaaatgaagtgaaaaaaata |
41866504 |
T |
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| Q |
203 |
tat-------catcattctgatcaaaggtcacatttgcctatcgcaacaactttgttttcatgg |
259 |
Q |
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||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41866503 |
tatcaaagtacatctttctgatcaaaggtcacacttgcctatcgcaacaactttgttttcatgg |
41866440 |
T |
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