View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10707_low_42 (Length: 275)
Name: NF10707_low_42
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 44124688 - 44124941
Alignment:
| Q |
17 |
accaagtaacaacaaagctataaccaaaaccataacaataatttacattcaccattcacatttcacgtctttctcgttcacactacactttaattaactc |
116 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44124688 |
accaagtaacaacaaagctataaccaaaaccataataataatttacattcaccattcacatttcacgtctttctcgttcacactacactttaattaactc |
44124787 |
T |
|
| Q |
117 |
aactcaac-----aataattctgaaattgtaagnnnnnnngtaataataatcaaatcaaacggtcacaaattgatcgatcaattcaaggcattccctttt |
211 |
Q |
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|||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44124788 |
aactcaactcaacaataattctgaaattggaagaaaaaaagtaataataatcaaatcaaacggtcacaaattgatcgatcaattcaaggcattccttttt |
44124887 |
T |
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| Q |
212 |
gtgcgtaaccattaacaagtgccaaagcattactcgtcaactttttcacctttg |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44124888 |
gtgcgtaaccattaacaagtgccaaagcattactcgtcaactttttcacctttg |
44124941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 50036554 - 50036807
Alignment:
| Q |
17 |
accaagtaacaacaaagctataaccaaaaccataacaataatttacattcaccattcacatttcacgtctttctcgttcacactacactttaattaactc |
116 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50036554 |
accaagtaacaacaaagctataaccaaaaccataataataatttacattcaccattcacatttcacgtctttctcgttcacactacactttaattaactc |
50036653 |
T |
|
| Q |
117 |
aactcaac-----aataattctgaaattgtaagnnnnnnngtaataataatcaaatcaaacggtcacaaattgatcgatcaattcaaggcattccctttt |
211 |
Q |
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|||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50036654 |
aactcaactcaacaataattctgaaattggaagaaaaaaagtaataataatcaaatcaaacggtcacaaattgatcgatcaattcaaggcattccttttt |
50036753 |
T |
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| Q |
212 |
gtgcgtaaccattaacaagtgccaaagcattactcgtcaactttttcacctttg |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50036754 |
gtgcgtaaccattaacaagtgccaaagcattactcgtcaactttttcacctttg |
50036807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 50043768 - 50044029
Alignment:
| Q |
17 |
accaagtaacaacaaagctataaccaaaacc-------ataacaataatttacattcaccattcacatttcacgtctttctcgttcacactac------- |
102 |
Q |
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||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50043768 |
accaagtaacaacaaagctataaccaaaaaccataataataataataatttacattcaccattcacatttcacgtctttctcgttcacactactgtcaca |
50043867 |
T |
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| Q |
103 |
---actttaattaactcaactcaacaataattctgaaattgtaagnnnnnnngtaataataatcaaatcaaacggtcacaaattgatcgatcaattcaag |
199 |
Q |
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||| | || | | |||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
50043868 |
cacactacactttaattaactcaacaataattctgaaattggaagaaaaaaagtaatagtaatcaaatcaaacggtcacaaattgatc----aattcaag |
50043963 |
T |
|
| Q |
200 |
gcattcccttttgtgcgtaaccattaacaagtgccaaagcattactcgtcaactttttcacctttg |
265 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
50043964 |
gcattcctttttgtgcgtaaccattaacaagtgccaaagcattactcgtgaactttttcacctttg |
50044029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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