View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10707_low_47 (Length: 259)
Name: NF10707_low_47
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 16214106 - 16213871
Alignment:
| Q |
17 |
atagcaacgctatagtactgctgcctagcgaaatttgaacatgccgctattttcctatatctacggttgacaacactgactattatagtcaatgtgactc |
116 |
Q |
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| T |
16214106 |
atagcaacgctatagtactgctgcctagcggaatttgaacatgccgctattttcctatatctacggttgacaacactgactattatagtcaatgtgactc |
16214007 |
T |
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| Q |
117 |
aataatatgaattcgaagaacgtcctattgaaaattctaaaagtcaagtgtttattgaatgtgctgttttctacttgctgctgatgaagaagtttcagca |
216 |
Q |
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| T |
16214006 |
aataatatgaattcgaagaacatcctattgaaaattctaaaagtcaagtgtttattgaatgtgctgttttccacttgctgctgatgaagaagtttcagca |
16213907 |
T |
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| Q |
217 |
aacttgcatatttcttagtttgagagtctgcctttg |
252 |
Q |
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| T |
16213906 |
aacttgcatatttcttagtttgagagtctgcctttg |
16213871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 71 - 252
Target Start/End: Complemental strand, 33735432 - 33735254
Alignment:
| Q |
71 |
ctatatctacggttgacaacactgactattatagtcaatgtgactcaataatatgaattcgaagaacgtcctattgaaaattctaaaagtcaagtgttta |
170 |
Q |
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| T |
33735432 |
ctatatctacggttgacaacactgactattatagtcaatgtgactcaataacatgaattcaaagaacatccttctgaaaattctaaaagtcaagttttta |
33735333 |
T |
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| Q |
171 |
ttgaatgtgctgttttctacttgctgctgatgaagaagtttcagcaaacttgcatatttcttagtttgagagtctgcctttg |
252 |
Q |
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| T |
33735332 |
ttgaatgtgctgttttccacttgctgctgat---gaagtttcagcaaacttacatatttcttagtttgagagtctgtctttg |
33735254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 9053887 - 9053839
Alignment:
| Q |
46 |
gaaatttgaacatgccgctattttcctatatctacggttgacaacactg |
94 |
Q |
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| T |
9053887 |
gaaatttgaacaaaccgctattttccactatccacggttgacaacactg |
9053839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 41711120 - 41711264
Alignment:
| Q |
105 |
tcaatgtgactcaataatatgaattcgaagaacgtcctattgaaaattctaaaagtcaagtgtttattgaatgtgctgttttctacttgctgctgatgaa |
204 |
Q |
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|||||||| ||||| ||||||||||| ||| || || ||||||||||||| |||| ||||| | || |||||| | ||||| | || |||||||||| |
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| T |
41711120 |
tcaatgtggctcaaaaatatgaattcaaaggacatcttattgaaaattctcgaagtgaagtgct-atcaaatgtgttcttttccatatgttgctgatgaa |
41711218 |
T |
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| Q |
205 |
gaagtttcagcaaacttgcata-tttcttagtttgagagtctgcctttg |
252 |
Q |
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| T |
41711219 |
g---tttcagcaaacttgcatattttcttagtttgagattctgcttttg |
41711264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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