View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10707_low_5 (Length: 456)
Name: NF10707_low_5
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 201 - 449
Target Start/End: Complemental strand, 40260424 - 40260176
Alignment:
| Q |
201 |
tcgtcaaaggttttcacaagcaagagacatgaatccactaaatgaccatcgatacacacaactccatgttaggagcaccaatacaacttaccttaccata |
300 |
Q |
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| T |
40260424 |
tcgtcaaaggttttcacaagcaagagacatgaatccactaaatgaccatcgatacacacaactccatgttaggagcaccaatacaacttaccttaccaca |
40260325 |
T |
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| Q |
301 |
tttgagagatttgaatgtgatagttaagtctcacattgatttaaacgagttaaatattgaacacataaaagagacaattcatatactcaaaaccttaaat |
400 |
Q |
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| T |
40260324 |
tatgagagatttgagtgtgatagttaagtctcaaattgatttaaacgagttaaatgttgaacatataagagagacaattcatatactcaaaaccttaaat |
40260225 |
T |
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| Q |
401 |
ttttagatcggatgtaattttaataaagtttaacttattgttcatctca |
449 |
Q |
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| T |
40260224 |
ttttagataggatgtagttttaataaagtttaactcattgttcttctca |
40260176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 40260584 - 40260429
Alignment:
| Q |
16 |
tagatgtcattcggccgtgaaatgtgaaaaattggactgtgtatggtgccatgagaagccatgaagtagtagaaagacgcacacacnnnnnnnnntcttc |
115 |
Q |
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| T |
40260584 |
tagatgtcattcagccgtgaaatgtgaaaaattggactgtgtatggtgccatgagaagccatgaagtagtagaaagacgcacaca-aaaaaaaaatcttt |
40260486 |
T |
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| Q |
116 |
gagaaattctactaattgtttttacaaactgggtctctatatctaaacaaaatgtcta |
173 |
Q |
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| T |
40260485 |
gagaaa-tctactaattgtttttacaaactgggtctctatacctaaacaaaatgtcta |
40260429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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